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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pma: Prochlorococcus marinus SS120

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pma00010 Glycolysis / Gluconeogenesis SBML MML
pma00020 Citrate cycle (TCA cycle) SBML MML
pma00030 Pentose phosphate pathway SBML MML
pma00040 Pentose and glucuronate interconversions SBML MML
pma00051 Fructose and mannose metabolism SBML MML
pma00052 Galactose metabolism SBML MML
pma00053 Ascorbate and aldarate metabolism SBML MML
pma00061 Fatty acid biosynthesis SBML MML
pma00071 Fatty acid metabolism SBML MML
pma00100 (Undocumented) SBML MML
pma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pma00220 (Undocumented) SBML MML
pma00230 Purine metabolism SBML MML
pma00240 Pyrimidine metabolism SBML MML
pma00251 (Undocumented) SBML MML
pma00252 (Undocumented) SBML MML
pma00260 Glycine, serine and threonine metabolism SBML MML
pma00271 (Undocumented) SBML MML
pma00272 (Undocumented) SBML MML
pma00280 Valine, leucine and isoleucine degradation SBML MML
pma00290 Valine, leucine and isoleucine biosynthesis SBML MML
pma00300 Lysine biosynthesis SBML MML
pma00310 Lysine degradation SBML MML
pma00330 Arginine and proline metabolism SBML MML
pma00340 Histidine metabolism SBML MML
pma00350 Tyrosine metabolism SBML MML
pma00360 Phenylalanine metabolism SBML MML
pma00380 Tryptophan metabolism SBML MML
pma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pma00401 Novobiocin biosynthesis SBML MML
pma00410 beta-Alanine metabolism SBML MML
pma00430 Taurine and hypotaurine metabolism SBML MML
pma00450 Selenoamino acid metabolism SBML MML
pma00460 (Undocumented) SBML MML
pma00471 D-Glutamine and D-glutamate metabolism SBML MML
pma00473 D-Alanine metabolism SBML MML
pma00480 Glutathione metabolism SBML MML
pma00500 Starch and sucrose metabolism SBML MML
pma00520 Amino sugar and nucleotide sugar metabolism SBML MML
pma00521 Streptomycin biosynthesis SBML MML
pma00530 (Undocumented) SBML MML
pma00540 Lipopolysaccharide biosynthesis SBML MML
pma00550 Peptidoglycan biosynthesis SBML MML
pma00561 Glycerolipid metabolism SBML MML
pma00562 Inositol phosphate metabolism SBML MML
pma00564 Glycerophospholipid metabolism SBML MML
pma00590 Arachidonic acid metabolism SBML MML
pma00620 Pyruvate metabolism SBML MML
pma00630 Glyoxylate and dicarboxylate metabolism SBML MML
pma00640 Propanoate metabolism SBML MML
pma00641 3-Chloroacrylic acid degradation SBML MML
pma00650 Butanoate metabolism SBML MML
pma00670 One carbon pool by folate SBML MML
pma00680 Methane metabolism SBML MML
pma00710 (Undocumented) SBML MML
pma00720 (Undocumented) SBML MML
pma00730 Thiamine metabolism SBML MML
pma00740 Riboflavin metabolism SBML MML
pma00750 Vitamin B6 metabolism SBML MML
pma00760 Nicotinate and nicotinamide metabolism SBML MML
pma00770 Pantothenate and CoA biosynthesis SBML MML
pma00780 Biotin metabolism SBML MML
pma00785 Lipoic acid metabolism SBML MML
pma00790 Folate biosynthesis SBML MML
pma00860 Porphyrin and chlorophyll metabolism SBML MML
pma00900 Terpenoid backbone biosynthesis SBML MML
pma00906 Carotenoid biosynthesis SBML MML
pma00910 Nitrogen metabolism SBML MML
pma00920 Sulfur metabolism SBML MML
pma00940 (Undocumented) SBML MML
pma00950 (Undocumented) SBML MML
pma00970 Aminoacyl-tRNA biosynthesis SBML MML
pma00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.