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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pmf: Prochlorococcus marinus MIT 9303

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pmf00010 Glycolysis / Gluconeogenesis SBML MML
pmf00020 Citrate cycle (TCA cycle) SBML MML
pmf00030 Pentose phosphate pathway SBML MML
pmf00040 Pentose and glucuronate interconversions SBML MML
pmf00051 Fructose and mannose metabolism SBML MML
pmf00052 Galactose metabolism SBML MML
pmf00053 Ascorbate and aldarate metabolism SBML MML
pmf00061 Fatty acid biosynthesis SBML MML
pmf00071 Fatty acid metabolism SBML MML
pmf00100 (Undocumented) SBML MML
pmf00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pmf00220 (Undocumented) SBML MML
pmf00230 Purine metabolism SBML MML
pmf00240 Pyrimidine metabolism SBML MML
pmf00251 (Undocumented) SBML MML
pmf00252 (Undocumented) SBML MML
pmf00260 Glycine, serine and threonine metabolism SBML MML
pmf00271 (Undocumented) SBML MML
pmf00272 (Undocumented) SBML MML
pmf00280 Valine, leucine and isoleucine degradation SBML MML
pmf00290 Valine, leucine and isoleucine biosynthesis SBML MML
pmf00300 Lysine biosynthesis SBML MML
pmf00310 Lysine degradation SBML MML
pmf00311 Penicillin and cephalosporin biosynthesis SBML MML
pmf00330 Arginine and proline metabolism SBML MML
pmf00340 Histidine metabolism SBML MML
pmf00350 Tyrosine metabolism SBML MML
pmf00360 Phenylalanine metabolism SBML MML
pmf00361 gamma-Hexachlorocyclohexane degradation SBML MML
pmf00364 Fluorobenzoate degradation SBML MML
pmf00380 Tryptophan metabolism SBML MML
pmf00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pmf00401 Novobiocin biosynthesis SBML MML
pmf00410 beta-Alanine metabolism SBML MML
pmf00430 Taurine and hypotaurine metabolism SBML MML
pmf00450 Selenoamino acid metabolism SBML MML
pmf00460 (Undocumented) SBML MML
pmf00471 D-Glutamine and D-glutamate metabolism SBML MML
pmf00472 D-Arginine and D-ornithine metabolism SBML MML
pmf00473 D-Alanine metabolism SBML MML
pmf00480 Glutathione metabolism SBML MML
pmf00500 Starch and sucrose metabolism SBML MML
pmf00520 Amino sugar and nucleotide sugar metabolism SBML MML
pmf00521 Streptomycin biosynthesis SBML MML
pmf00523 Polyketide sugar unit biosynthesis SBML MML
pmf00530 (Undocumented) SBML MML
pmf00540 Lipopolysaccharide biosynthesis SBML MML
pmf00550 Peptidoglycan biosynthesis SBML MML
pmf00561 Glycerolipid metabolism SBML MML
pmf00562 Inositol phosphate metabolism SBML MML
pmf00564 Glycerophospholipid metabolism SBML MML
pmf00590 Arachidonic acid metabolism SBML MML
pmf00620 Pyruvate metabolism SBML MML
pmf00627 1,4-Dichlorobenzene degradation SBML MML
pmf00630 Glyoxylate and dicarboxylate metabolism SBML MML
pmf00632 (Undocumented) SBML MML
pmf00640 Propanoate metabolism SBML MML
pmf00641 3-Chloroacrylic acid degradation SBML MML
pmf00650 Butanoate metabolism SBML MML
pmf00670 One carbon pool by folate SBML MML
pmf00680 Methane metabolism SBML MML
pmf00710 (Undocumented) SBML MML
pmf00720 (Undocumented) SBML MML
pmf00730 Thiamine metabolism SBML MML
pmf00740 Riboflavin metabolism SBML MML
pmf00750 Vitamin B6 metabolism SBML MML
pmf00760 Nicotinate and nicotinamide metabolism SBML MML
pmf00770 Pantothenate and CoA biosynthesis SBML MML
pmf00780 Biotin metabolism SBML MML
pmf00785 Lipoic acid metabolism SBML MML
pmf00790 Folate biosynthesis SBML MML
pmf00860 Porphyrin and chlorophyll metabolism SBML MML
pmf00900 Terpenoid backbone biosynthesis SBML MML
pmf00906 Carotenoid biosynthesis SBML MML
pmf00910 Nitrogen metabolism SBML MML
pmf00920 Sulfur metabolism SBML MML
pmf00941 (Undocumented) SBML MML
pmf00970 Aminoacyl-tRNA biosynthesis SBML MML
pmf00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pmf00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.