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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pmh: Prochlorococcus marinus MIT 9215

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pmh00010 Glycolysis / Gluconeogenesis SBML MML
pmh00020 Citrate cycle (TCA cycle) SBML MML
pmh00030 Pentose phosphate pathway SBML MML
pmh00040 Pentose and glucuronate interconversions SBML MML
pmh00051 Fructose and mannose metabolism SBML MML
pmh00052 Galactose metabolism SBML MML
pmh00053 Ascorbate and aldarate metabolism SBML MML
pmh00061 Fatty acid biosynthesis SBML MML
pmh00071 Fatty acid metabolism SBML MML
pmh00100 (Undocumented) SBML MML
pmh00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pmh00220 (Undocumented) SBML MML
pmh00230 Purine metabolism SBML MML
pmh00240 Pyrimidine metabolism SBML MML
pmh00251 (Undocumented) SBML MML
pmh00252 (Undocumented) SBML MML
pmh00260 Glycine, serine and threonine metabolism SBML MML
pmh00271 (Undocumented) SBML MML
pmh00272 (Undocumented) SBML MML
pmh00280 Valine, leucine and isoleucine degradation SBML MML
pmh00290 Valine, leucine and isoleucine biosynthesis SBML MML
pmh00300 Lysine biosynthesis SBML MML
pmh00310 Lysine degradation SBML MML
pmh00330 Arginine and proline metabolism SBML MML
pmh00340 Histidine metabolism SBML MML
pmh00350 Tyrosine metabolism SBML MML
pmh00360 Phenylalanine metabolism SBML MML
pmh00380 Tryptophan metabolism SBML MML
pmh00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pmh00401 Novobiocin biosynthesis SBML MML
pmh00410 beta-Alanine metabolism SBML MML
pmh00450 Selenoamino acid metabolism SBML MML
pmh00460 (Undocumented) SBML MML
pmh00471 D-Glutamine and D-glutamate metabolism SBML MML
pmh00472 D-Arginine and D-ornithine metabolism SBML MML
pmh00473 D-Alanine metabolism SBML MML
pmh00480 Glutathione metabolism SBML MML
pmh00500 Starch and sucrose metabolism SBML MML
pmh00520 Amino sugar and nucleotide sugar metabolism SBML MML
pmh00521 Streptomycin biosynthesis SBML MML
pmh00523 Polyketide sugar unit biosynthesis SBML MML
pmh00530 (Undocumented) SBML MML
pmh00540 Lipopolysaccharide biosynthesis SBML MML
pmh00550 Peptidoglycan biosynthesis SBML MML
pmh00561 Glycerolipid metabolism SBML MML
pmh00562 Inositol phosphate metabolism SBML MML
pmh00564 Glycerophospholipid metabolism SBML MML
pmh00590 Arachidonic acid metabolism SBML MML
pmh00620 Pyruvate metabolism SBML MML
pmh00630 Glyoxylate and dicarboxylate metabolism SBML MML
pmh00632 (Undocumented) SBML MML
pmh00640 Propanoate metabolism SBML MML
pmh00641 3-Chloroacrylic acid degradation SBML MML
pmh00650 Butanoate metabolism SBML MML
pmh00670 One carbon pool by folate SBML MML
pmh00680 Methane metabolism SBML MML
pmh00710 (Undocumented) SBML MML
pmh00720 (Undocumented) SBML MML
pmh00730 Thiamine metabolism SBML MML
pmh00740 Riboflavin metabolism SBML MML
pmh00750 Vitamin B6 metabolism SBML MML
pmh00760 Nicotinate and nicotinamide metabolism SBML MML
pmh00770 Pantothenate and CoA biosynthesis SBML MML
pmh00780 Biotin metabolism SBML MML
pmh00790 Folate biosynthesis SBML MML
pmh00860 Porphyrin and chlorophyll metabolism SBML MML
pmh00900 Terpenoid backbone biosynthesis SBML MML
pmh00906 Carotenoid biosynthesis SBML MML
pmh00910 Nitrogen metabolism SBML MML
pmh00920 Sulfur metabolism SBML MML
pmh00940 (Undocumented) SBML MML
pmh00950 (Undocumented) SBML MML
pmh00970 Aminoacyl-tRNA biosynthesis SBML MML
pmh00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pmh00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.