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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pmi: Prochlorococcus marinus MIT9312

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pmi00010 Glycolysis / Gluconeogenesis SBML MML
pmi00020 Citrate cycle (TCA cycle) SBML MML
pmi00030 Pentose phosphate pathway SBML MML
pmi00040 Pentose and glucuronate interconversions SBML MML
pmi00051 Fructose and mannose metabolism SBML MML
pmi00052 Galactose metabolism SBML MML
pmi00053 Ascorbate and aldarate metabolism SBML MML
pmi00061 Fatty acid biosynthesis SBML MML
pmi00071 Fatty acid metabolism SBML MML
pmi00100 (Undocumented) SBML MML
pmi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pmi00220 (Undocumented) SBML MML
pmi00230 Purine metabolism SBML MML
pmi00240 Pyrimidine metabolism SBML MML
pmi00251 (Undocumented) SBML MML
pmi00252 (Undocumented) SBML MML
pmi00260 Glycine, serine and threonine metabolism SBML MML
pmi00271 (Undocumented) SBML MML
pmi00272 (Undocumented) SBML MML
pmi00280 Valine, leucine and isoleucine degradation SBML MML
pmi00290 Valine, leucine and isoleucine biosynthesis SBML MML
pmi00300 Lysine biosynthesis SBML MML
pmi00310 Lysine degradation SBML MML
pmi00330 Arginine and proline metabolism SBML MML
pmi00340 Histidine metabolism SBML MML
pmi00350 Tyrosine metabolism SBML MML
pmi00360 Phenylalanine metabolism SBML MML
pmi00361 gamma-Hexachlorocyclohexane degradation SBML MML
pmi00364 Fluorobenzoate degradation SBML MML
pmi00380 Tryptophan metabolism SBML MML
pmi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pmi00401 Novobiocin biosynthesis SBML MML
pmi00410 beta-Alanine metabolism SBML MML
pmi00450 Selenoamino acid metabolism SBML MML
pmi00471 D-Glutamine and D-glutamate metabolism SBML MML
pmi00473 D-Alanine metabolism SBML MML
pmi00480 Glutathione metabolism SBML MML
pmi00500 Starch and sucrose metabolism SBML MML
pmi00520 Amino sugar and nucleotide sugar metabolism SBML MML
pmi00521 Streptomycin biosynthesis SBML MML
pmi00530 (Undocumented) SBML MML
pmi00540 Lipopolysaccharide biosynthesis SBML MML
pmi00550 Peptidoglycan biosynthesis SBML MML
pmi00561 Glycerolipid metabolism SBML MML
pmi00562 Inositol phosphate metabolism SBML MML
pmi00564 Glycerophospholipid metabolism SBML MML
pmi00590 Arachidonic acid metabolism SBML MML
pmi00620 Pyruvate metabolism SBML MML
pmi00627 1,4-Dichlorobenzene degradation SBML MML
pmi00630 Glyoxylate and dicarboxylate metabolism SBML MML
pmi00640 Propanoate metabolism SBML MML
pmi00641 3-Chloroacrylic acid degradation SBML MML
pmi00650 Butanoate metabolism SBML MML
pmi00670 One carbon pool by folate SBML MML
pmi00710 (Undocumented) SBML MML
pmi00720 (Undocumented) SBML MML
pmi00730 Thiamine metabolism SBML MML
pmi00740 Riboflavin metabolism SBML MML
pmi00750 Vitamin B6 metabolism SBML MML
pmi00760 Nicotinate and nicotinamide metabolism SBML MML
pmi00770 Pantothenate and CoA biosynthesis SBML MML
pmi00780 Biotin metabolism SBML MML
pmi00785 Lipoic acid metabolism SBML MML
pmi00790 Folate biosynthesis SBML MML
pmi00860 Porphyrin and chlorophyll metabolism SBML MML
pmi00900 Terpenoid backbone biosynthesis SBML MML
pmi00906 Carotenoid biosynthesis SBML MML
pmi00910 Nitrogen metabolism SBML MML
pmi00920 Sulfur metabolism SBML MML
pmi00940 (Undocumented) SBML MML
pmi00950 (Undocumented) SBML MML
pmi00970 Aminoacyl-tRNA biosynthesis SBML MML
pmi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pmi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.