This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pmt: Prochlorococcus marinus MIT9313

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pmt00010 Glycolysis / Gluconeogenesis SBML MML
pmt00020 Citrate cycle (TCA cycle) SBML MML
pmt00030 Pentose phosphate pathway SBML MML
pmt00040 Pentose and glucuronate interconversions SBML MML
pmt00051 Fructose and mannose metabolism SBML MML
pmt00052 Galactose metabolism SBML MML
pmt00053 Ascorbate and aldarate metabolism SBML MML
pmt00061 Fatty acid biosynthesis SBML MML
pmt00071 Fatty acid metabolism SBML MML
pmt00100 (Undocumented) SBML MML
pmt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pmt00150 Androgen and estrogen metabolism SBML MML
pmt00220 (Undocumented) SBML MML
pmt00230 Purine metabolism SBML MML
pmt00240 Pyrimidine metabolism SBML MML
pmt00251 (Undocumented) SBML MML
pmt00252 (Undocumented) SBML MML
pmt00260 Glycine, serine and threonine metabolism SBML MML
pmt00271 (Undocumented) SBML MML
pmt00272 (Undocumented) SBML MML
pmt00280 Valine, leucine and isoleucine degradation SBML MML
pmt00290 Valine, leucine and isoleucine biosynthesis SBML MML
pmt00300 Lysine biosynthesis SBML MML
pmt00310 Lysine degradation SBML MML
pmt00330 Arginine and proline metabolism SBML MML
pmt00340 Histidine metabolism SBML MML
pmt00350 Tyrosine metabolism SBML MML
pmt00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
pmt00360 Phenylalanine metabolism SBML MML
pmt00361 gamma-Hexachlorocyclohexane degradation SBML MML
pmt00362 (Undocumented) SBML MML
pmt00364 Fluorobenzoate degradation SBML MML
pmt00380 Tryptophan metabolism SBML MML
pmt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pmt00401 Novobiocin biosynthesis SBML MML
pmt00410 beta-Alanine metabolism SBML MML
pmt00430 Taurine and hypotaurine metabolism SBML MML
pmt00450 Selenoamino acid metabolism SBML MML
pmt00460 (Undocumented) SBML MML
pmt00471 D-Glutamine and D-glutamate metabolism SBML MML
pmt00473 D-Alanine metabolism SBML MML
pmt00480 Glutathione metabolism SBML MML
pmt00500 Starch and sucrose metabolism SBML MML
pmt00520 Amino sugar and nucleotide sugar metabolism SBML MML
pmt00521 Streptomycin biosynthesis SBML MML
pmt00523 Polyketide sugar unit biosynthesis SBML MML
pmt00530 (Undocumented) SBML MML
pmt00540 Lipopolysaccharide biosynthesis SBML MML
pmt00550 Peptidoglycan biosynthesis SBML MML
pmt00561 Glycerolipid metabolism SBML MML
pmt00562 Inositol phosphate metabolism SBML MML
pmt00564 Glycerophospholipid metabolism SBML MML
pmt00590 Arachidonic acid metabolism SBML MML
pmt00620 Pyruvate metabolism SBML MML
pmt00626 Naphthalene and anthracene degradation SBML MML
pmt00627 1,4-Dichlorobenzene degradation SBML MML
pmt00630 Glyoxylate and dicarboxylate metabolism SBML MML
pmt00640 Propanoate metabolism SBML MML
pmt00641 3-Chloroacrylic acid degradation SBML MML
pmt00650 Butanoate metabolism SBML MML
pmt00670 One carbon pool by folate SBML MML
pmt00680 Methane metabolism SBML MML
pmt00710 (Undocumented) SBML MML
pmt00720 (Undocumented) SBML MML
pmt00730 Thiamine metabolism SBML MML
pmt00740 Riboflavin metabolism SBML MML
pmt00750 Vitamin B6 metabolism SBML MML
pmt00760 Nicotinate and nicotinamide metabolism SBML MML
pmt00770 Pantothenate and CoA biosynthesis SBML MML
pmt00780 Biotin metabolism SBML MML
pmt00785 Lipoic acid metabolism SBML MML
pmt00790 Folate biosynthesis SBML MML
pmt00860 Porphyrin and chlorophyll metabolism SBML MML
pmt00900 Terpenoid backbone biosynthesis SBML MML
pmt00903 (Undocumented) SBML MML
pmt00906 Carotenoid biosynthesis SBML MML
pmt00910 Nitrogen metabolism SBML MML
pmt00920 Sulfur metabolism SBML MML
pmt00940 (Undocumented) SBML MML
pmt00941 (Undocumented) SBML MML
pmt00950 (Undocumented) SBML MML
pmt00970 Aminoacyl-tRNA biosynthesis SBML MML
pmt00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pmt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.