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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pmy: Pseudomonas mendocina

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pmy00010 Glycolysis / Gluconeogenesis SBML MML
pmy00020 Citrate cycle (TCA cycle) SBML MML
pmy00030 Pentose phosphate pathway SBML MML
pmy00031 (Undocumented) SBML MML
pmy00040 Pentose and glucuronate interconversions SBML MML
pmy00051 Fructose and mannose metabolism SBML MML
pmy00052 Galactose metabolism SBML MML
pmy00053 Ascorbate and aldarate metabolism SBML MML
pmy00061 Fatty acid biosynthesis SBML MML
pmy00062 Fatty acid elongation in mitochondria SBML MML
pmy00071 Fatty acid metabolism SBML MML
pmy00072 Synthesis and degradation of ketone bodies SBML MML
pmy00100 (Undocumented) SBML MML
pmy00120 (Undocumented) SBML MML
pmy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pmy00220 (Undocumented) SBML MML
pmy00230 Purine metabolism SBML MML
pmy00240 Pyrimidine metabolism SBML MML
pmy00251 (Undocumented) SBML MML
pmy00252 (Undocumented) SBML MML
pmy00260 Glycine, serine and threonine metabolism SBML MML
pmy00271 (Undocumented) SBML MML
pmy00272 (Undocumented) SBML MML
pmy00280 Valine, leucine and isoleucine degradation SBML MML
pmy00281 Geraniol degradation SBML MML
pmy00290 Valine, leucine and isoleucine biosynthesis SBML MML
pmy00300 Lysine biosynthesis SBML MML
pmy00310 Lysine degradation SBML MML
pmy00311 Penicillin and cephalosporin biosynthesis SBML MML
pmy00330 Arginine and proline metabolism SBML MML
pmy00340 Histidine metabolism SBML MML
pmy00350 Tyrosine metabolism SBML MML
pmy00360 Phenylalanine metabolism SBML MML
pmy00361 gamma-Hexachlorocyclohexane degradation SBML MML
pmy00362 (Undocumented) SBML MML
pmy00380 Tryptophan metabolism SBML MML
pmy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pmy00401 Novobiocin biosynthesis SBML MML
pmy00410 beta-Alanine metabolism SBML MML
pmy00430 Taurine and hypotaurine metabolism SBML MML
pmy00450 Selenoamino acid metabolism SBML MML
pmy00460 (Undocumented) SBML MML
pmy00471 D-Glutamine and D-glutamate metabolism SBML MML
pmy00473 D-Alanine metabolism SBML MML
pmy00480 Glutathione metabolism SBML MML
pmy00500 Starch and sucrose metabolism SBML MML
pmy00520 Amino sugar and nucleotide sugar metabolism SBML MML
pmy00521 Streptomycin biosynthesis SBML MML
pmy00523 Polyketide sugar unit biosynthesis SBML MML
pmy00530 (Undocumented) SBML MML
pmy00540 Lipopolysaccharide biosynthesis SBML MML
pmy00550 Peptidoglycan biosynthesis SBML MML
pmy00561 Glycerolipid metabolism SBML MML
pmy00562 Inositol phosphate metabolism SBML MML
pmy00564 Glycerophospholipid metabolism SBML MML
pmy00565 Ether lipid metabolism SBML MML
pmy00590 Arachidonic acid metabolism SBML MML
pmy00592 alpha-Linolenic acid metabolism SBML MML
pmy00620 Pyruvate metabolism SBML MML
pmy00624 1- and 2-Methylnaphthalene degradation SBML MML
pmy00630 Glyoxylate and dicarboxylate metabolism SBML MML
pmy00632 (Undocumented) SBML MML
pmy00633 Trinitrotoluene degradation SBML MML
pmy00640 Propanoate metabolism SBML MML
pmy00641 3-Chloroacrylic acid degradation SBML MML
pmy00643 Styrene degradation SBML MML
pmy00650 Butanoate metabolism SBML MML
pmy00660 C5-Branched dibasic acid metabolism SBML MML
pmy00670 One carbon pool by folate SBML MML
pmy00680 Methane metabolism SBML MML
pmy00710 (Undocumented) SBML MML
pmy00720 (Undocumented) SBML MML
pmy00730 Thiamine metabolism SBML MML
pmy00740 Riboflavin metabolism SBML MML
pmy00750 Vitamin B6 metabolism SBML MML
pmy00760 Nicotinate and nicotinamide metabolism SBML MML
pmy00770 Pantothenate and CoA biosynthesis SBML MML
pmy00780 Biotin metabolism SBML MML
pmy00785 Lipoic acid metabolism SBML MML
pmy00790 Folate biosynthesis SBML MML
pmy00791 Atrazine degradation SBML MML
pmy00860 Porphyrin and chlorophyll metabolism SBML MML
pmy00900 Terpenoid backbone biosynthesis SBML MML
pmy00903 (Undocumented) SBML MML
pmy00910 Nitrogen metabolism SBML MML
pmy00920 Sulfur metabolism SBML MML
pmy00930 Caprolactam degradation SBML MML
pmy00940 (Undocumented) SBML MML
pmy00950 (Undocumented) SBML MML
pmy00960 (Undocumented) SBML MML
pmy00970 Aminoacyl-tRNA biosynthesis SBML MML
pmy00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pmy00982 (Undocumented) SBML MML
pmy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.