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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ppf: Pseudomonas putida F1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ppf00010 Glycolysis / Gluconeogenesis SBML MML
ppf00020 Citrate cycle (TCA cycle) SBML MML
ppf00030 Pentose phosphate pathway SBML MML
ppf00031 (Undocumented) SBML MML
ppf00040 Pentose and glucuronate interconversions SBML MML
ppf00051 Fructose and mannose metabolism SBML MML
ppf00052 Galactose metabolism SBML MML
ppf00053 Ascorbate and aldarate metabolism SBML MML
ppf00061 Fatty acid biosynthesis SBML MML
ppf00062 Fatty acid elongation in mitochondria SBML MML
ppf00071 Fatty acid metabolism SBML MML
ppf00072 Synthesis and degradation of ketone bodies SBML MML
ppf00100 (Undocumented) SBML MML
ppf00120 (Undocumented) SBML MML
ppf00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ppf00220 (Undocumented) SBML MML
ppf00230 Purine metabolism SBML MML
ppf00240 Pyrimidine metabolism SBML MML
ppf00251 (Undocumented) SBML MML
ppf00252 (Undocumented) SBML MML
ppf00260 Glycine, serine and threonine metabolism SBML MML
ppf00271 (Undocumented) SBML MML
ppf00272 (Undocumented) SBML MML
ppf00280 Valine, leucine and isoleucine degradation SBML MML
ppf00281 Geraniol degradation SBML MML
ppf00290 Valine, leucine and isoleucine biosynthesis SBML MML
ppf00300 Lysine biosynthesis SBML MML
ppf00310 Lysine degradation SBML MML
ppf00330 Arginine and proline metabolism SBML MML
ppf00340 Histidine metabolism SBML MML
ppf00350 Tyrosine metabolism SBML MML
ppf00360 Phenylalanine metabolism SBML MML
ppf00361 gamma-Hexachlorocyclohexane degradation SBML MML
ppf00362 (Undocumented) SBML MML
ppf00364 Fluorobenzoate degradation SBML MML
ppf00380 Tryptophan metabolism SBML MML
ppf00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ppf00401 Novobiocin biosynthesis SBML MML
ppf00410 beta-Alanine metabolism SBML MML
ppf00430 Taurine and hypotaurine metabolism SBML MML
ppf00440 Phosphonate and phosphinate metabolism SBML MML
ppf00450 Selenoamino acid metabolism SBML MML
ppf00460 (Undocumented) SBML MML
ppf00471 D-Glutamine and D-glutamate metabolism SBML MML
ppf00473 D-Alanine metabolism SBML MML
ppf00480 Glutathione metabolism SBML MML
ppf00500 Starch and sucrose metabolism SBML MML
ppf00520 Amino sugar and nucleotide sugar metabolism SBML MML
ppf00521 Streptomycin biosynthesis SBML MML
ppf00523 Polyketide sugar unit biosynthesis SBML MML
ppf00530 (Undocumented) SBML MML
ppf00540 Lipopolysaccharide biosynthesis SBML MML
ppf00550 Peptidoglycan biosynthesis SBML MML
ppf00561 Glycerolipid metabolism SBML MML
ppf00562 Inositol phosphate metabolism SBML MML
ppf00564 Glycerophospholipid metabolism SBML MML
ppf00590 Arachidonic acid metabolism SBML MML
ppf00592 alpha-Linolenic acid metabolism SBML MML
ppf00620 Pyruvate metabolism SBML MML
ppf00621 (Undocumented) SBML MML
ppf00622 Toluene and xylene degradation SBML MML
ppf00623 2,4-Dichlorobenzoate degradation SBML MML
ppf00624 1- and 2-Methylnaphthalene degradation SBML MML
ppf00626 Naphthalene and anthracene degradation SBML MML
ppf00627 1,4-Dichlorobenzene degradation SBML MML
ppf00628 Fluorene degradation SBML MML
ppf00629 Carbazole degradation SBML MML
ppf00630 Glyoxylate and dicarboxylate metabolism SBML MML
ppf00631 1,2-Dichloroethane degradation SBML MML
ppf00632 (Undocumented) SBML MML
ppf00633 Trinitrotoluene degradation SBML MML
ppf00640 Propanoate metabolism SBML MML
ppf00641 3-Chloroacrylic acid degradation SBML MML
ppf00642 Ethylbenzene degradation SBML MML
ppf00643 Styrene degradation SBML MML
ppf00650 Butanoate metabolism SBML MML
ppf00660 C5-Branched dibasic acid metabolism SBML MML
ppf00670 One carbon pool by folate SBML MML
ppf00680 Methane metabolism SBML MML
ppf00710 (Undocumented) SBML MML
ppf00720 (Undocumented) SBML MML
ppf00730 Thiamine metabolism SBML MML
ppf00740 Riboflavin metabolism SBML MML
ppf00750 Vitamin B6 metabolism SBML MML
ppf00760 Nicotinate and nicotinamide metabolism SBML MML
ppf00770 Pantothenate and CoA biosynthesis SBML MML
ppf00780 Biotin metabolism SBML MML
ppf00785 Lipoic acid metabolism SBML MML
ppf00790 Folate biosynthesis SBML MML
ppf00791 Atrazine degradation SBML MML
ppf00860 Porphyrin and chlorophyll metabolism SBML MML
ppf00900 Terpenoid backbone biosynthesis SBML MML
ppf00903 (Undocumented) SBML MML
ppf00910 Nitrogen metabolism SBML MML
ppf00920 Sulfur metabolism SBML MML
ppf00930 Caprolactam degradation SBML MML
ppf00940 (Undocumented) SBML MML
ppf00950 (Undocumented) SBML MML
ppf00960 (Undocumented) SBML MML
ppf00970 Aminoacyl-tRNA biosynthesis SBML MML
ppf00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ppf00982 (Undocumented) SBML MML
ppf00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.