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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ppr: Photobacterium profundum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ppr00010 Glycolysis / Gluconeogenesis SBML MML
ppr00020 Citrate cycle (TCA cycle) SBML MML
ppr00030 Pentose phosphate pathway SBML MML
ppr00031 (Undocumented) SBML MML
ppr00040 Pentose and glucuronate interconversions SBML MML
ppr00051 Fructose and mannose metabolism SBML MML
ppr00052 Galactose metabolism SBML MML
ppr00053 Ascorbate and aldarate metabolism SBML MML
ppr00061 Fatty acid biosynthesis SBML MML
ppr00062 Fatty acid elongation in mitochondria SBML MML
ppr00071 Fatty acid metabolism SBML MML
ppr00072 Synthesis and degradation of ketone bodies SBML MML
ppr00100 (Undocumented) SBML MML
ppr00120 (Undocumented) SBML MML
ppr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ppr00220 (Undocumented) SBML MML
ppr00230 Purine metabolism SBML MML
ppr00240 Pyrimidine metabolism SBML MML
ppr00251 (Undocumented) SBML MML
ppr00252 (Undocumented) SBML MML
ppr00260 Glycine, serine and threonine metabolism SBML MML
ppr00271 (Undocumented) SBML MML
ppr00272 (Undocumented) SBML MML
ppr00280 Valine, leucine and isoleucine degradation SBML MML
ppr00281 Geraniol degradation SBML MML
ppr00290 Valine, leucine and isoleucine biosynthesis SBML MML
ppr00300 Lysine biosynthesis SBML MML
ppr00310 Lysine degradation SBML MML
ppr00330 Arginine and proline metabolism SBML MML
ppr00340 Histidine metabolism SBML MML
ppr00350 Tyrosine metabolism SBML MML
ppr00360 Phenylalanine metabolism SBML MML
ppr00361 gamma-Hexachlorocyclohexane degradation SBML MML
ppr00362 (Undocumented) SBML MML
ppr00363 Bisphenol A degradation SBML MML
ppr00380 Tryptophan metabolism SBML MML
ppr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ppr00401 Novobiocin biosynthesis SBML MML
ppr00410 beta-Alanine metabolism SBML MML
ppr00430 Taurine and hypotaurine metabolism SBML MML
ppr00450 Selenoamino acid metabolism SBML MML
ppr00460 (Undocumented) SBML MML
ppr00471 D-Glutamine and D-glutamate metabolism SBML MML
ppr00473 D-Alanine metabolism SBML MML
ppr00480 Glutathione metabolism SBML MML
ppr00500 Starch and sucrose metabolism SBML MML
ppr00520 Amino sugar and nucleotide sugar metabolism SBML MML
ppr00521 Streptomycin biosynthesis SBML MML
ppr00530 (Undocumented) SBML MML
ppr00540 Lipopolysaccharide biosynthesis SBML MML
ppr00550 Peptidoglycan biosynthesis SBML MML
ppr00561 Glycerolipid metabolism SBML MML
ppr00562 Inositol phosphate metabolism SBML MML
ppr00564 Glycerophospholipid metabolism SBML MML
ppr00590 Arachidonic acid metabolism SBML MML
ppr00592 alpha-Linolenic acid metabolism SBML MML
ppr00600 Sphingolipid metabolism SBML MML
ppr00620 Pyruvate metabolism SBML MML
ppr00624 1- and 2-Methylnaphthalene degradation SBML MML
ppr00626 Naphthalene and anthracene degradation SBML MML
ppr00630 Glyoxylate and dicarboxylate metabolism SBML MML
ppr00631 1,2-Dichloroethane degradation SBML MML
ppr00632 (Undocumented) SBML MML
ppr00633 Trinitrotoluene degradation SBML MML
ppr00640 Propanoate metabolism SBML MML
ppr00641 3-Chloroacrylic acid degradation SBML MML
ppr00642 Ethylbenzene degradation SBML MML
ppr00643 Styrene degradation SBML MML
ppr00650 Butanoate metabolism SBML MML
ppr00660 C5-Branched dibasic acid metabolism SBML MML
ppr00670 One carbon pool by folate SBML MML
ppr00680 Methane metabolism SBML MML
ppr00710 (Undocumented) SBML MML
ppr00720 (Undocumented) SBML MML
ppr00730 Thiamine metabolism SBML MML
ppr00740 Riboflavin metabolism SBML MML
ppr00750 Vitamin B6 metabolism SBML MML
ppr00760 Nicotinate and nicotinamide metabolism SBML MML
ppr00770 Pantothenate and CoA biosynthesis SBML MML
ppr00780 Biotin metabolism SBML MML
ppr00785 Lipoic acid metabolism SBML MML
ppr00790 Folate biosynthesis SBML MML
ppr00791 Atrazine degradation SBML MML
ppr00860 Porphyrin and chlorophyll metabolism SBML MML
ppr00900 Terpenoid backbone biosynthesis SBML MML
ppr00903 (Undocumented) SBML MML
ppr00910 Nitrogen metabolism SBML MML
ppr00920 Sulfur metabolism SBML MML
ppr00930 Caprolactam degradation SBML MML
ppr00940 (Undocumented) SBML MML
ppr00950 (Undocumented) SBML MML
ppr00960 (Undocumented) SBML MML
ppr00970 Aminoacyl-tRNA biosynthesis SBML MML
ppr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ppr00982 (Undocumented) SBML MML
ppr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.