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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism psp: Pseudomonas syringae pv. phaseolicola 1448A

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
psp00010 Glycolysis / Gluconeogenesis SBML MML
psp00020 Citrate cycle (TCA cycle) SBML MML
psp00030 Pentose phosphate pathway SBML MML
psp00031 (Undocumented) SBML MML
psp00040 Pentose and glucuronate interconversions SBML MML
psp00051 Fructose and mannose metabolism SBML MML
psp00052 Galactose metabolism SBML MML
psp00053 Ascorbate and aldarate metabolism SBML MML
psp00061 Fatty acid biosynthesis SBML MML
psp00062 Fatty acid elongation in mitochondria SBML MML
psp00071 Fatty acid metabolism SBML MML
psp00072 Synthesis and degradation of ketone bodies SBML MML
psp00100 (Undocumented) SBML MML
psp00120 (Undocumented) SBML MML
psp00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
psp00140 (Undocumented) SBML MML
psp00150 Androgen and estrogen metabolism SBML MML
psp00220 (Undocumented) SBML MML
psp00230 Purine metabolism SBML MML
psp00240 Pyrimidine metabolism SBML MML
psp00251 (Undocumented) SBML MML
psp00252 (Undocumented) SBML MML
psp00260 Glycine, serine and threonine metabolism SBML MML
psp00271 (Undocumented) SBML MML
psp00272 (Undocumented) SBML MML
psp00280 Valine, leucine and isoleucine degradation SBML MML
psp00281 Geraniol degradation SBML MML
psp00290 Valine, leucine and isoleucine biosynthesis SBML MML
psp00300 Lysine biosynthesis SBML MML
psp00310 Lysine degradation SBML MML
psp00330 Arginine and proline metabolism SBML MML
psp00340 Histidine metabolism SBML MML
psp00350 Tyrosine metabolism SBML MML
psp00360 Phenylalanine metabolism SBML MML
psp00361 gamma-Hexachlorocyclohexane degradation SBML MML
psp00362 (Undocumented) SBML MML
psp00363 Bisphenol A degradation SBML MML
psp00364 Fluorobenzoate degradation SBML MML
psp00380 Tryptophan metabolism SBML MML
psp00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
psp00401 Novobiocin biosynthesis SBML MML
psp00410 beta-Alanine metabolism SBML MML
psp00430 Taurine and hypotaurine metabolism SBML MML
psp00450 Selenoamino acid metabolism SBML MML
psp00460 (Undocumented) SBML MML
psp00471 D-Glutamine and D-glutamate metabolism SBML MML
psp00473 D-Alanine metabolism SBML MML
psp00480 Glutathione metabolism SBML MML
psp00500 Starch and sucrose metabolism SBML MML
psp00520 Amino sugar and nucleotide sugar metabolism SBML MML
psp00521 Streptomycin biosynthesis SBML MML
psp00523 Polyketide sugar unit biosynthesis SBML MML
psp00530 (Undocumented) SBML MML
psp00540 Lipopolysaccharide biosynthesis SBML MML
psp00550 Peptidoglycan biosynthesis SBML MML
psp00561 Glycerolipid metabolism SBML MML
psp00562 Inositol phosphate metabolism SBML MML
psp00564 Glycerophospholipid metabolism SBML MML
psp00590 Arachidonic acid metabolism SBML MML
psp00592 alpha-Linolenic acid metabolism SBML MML
psp00620 Pyruvate metabolism SBML MML
psp00622 Toluene and xylene degradation SBML MML
psp00623 2,4-Dichlorobenzoate degradation SBML MML
psp00624 1- and 2-Methylnaphthalene degradation SBML MML
psp00626 Naphthalene and anthracene degradation SBML MML
psp00627 1,4-Dichlorobenzene degradation SBML MML
psp00628 Fluorene degradation SBML MML
psp00630 Glyoxylate and dicarboxylate metabolism SBML MML
psp00631 1,2-Dichloroethane degradation SBML MML
psp00632 (Undocumented) SBML MML
psp00640 Propanoate metabolism SBML MML
psp00641 3-Chloroacrylic acid degradation SBML MML
psp00642 Ethylbenzene degradation SBML MML
psp00643 Styrene degradation SBML MML
psp00650 Butanoate metabolism SBML MML
psp00660 C5-Branched dibasic acid metabolism SBML MML
psp00670 One carbon pool by folate SBML MML
psp00680 Methane metabolism SBML MML
psp00710 (Undocumented) SBML MML
psp00720 (Undocumented) SBML MML
psp00730 Thiamine metabolism SBML MML
psp00740 Riboflavin metabolism SBML MML
psp00750 Vitamin B6 metabolism SBML MML
psp00760 Nicotinate and nicotinamide metabolism SBML MML
psp00770 Pantothenate and CoA biosynthesis SBML MML
psp00780 Biotin metabolism SBML MML
psp00785 Lipoic acid metabolism SBML MML
psp00790 Folate biosynthesis SBML MML
psp00791 Atrazine degradation SBML MML
psp00860 Porphyrin and chlorophyll metabolism SBML MML
psp00900 Terpenoid backbone biosynthesis SBML MML
psp00903 (Undocumented) SBML MML
psp00910 Nitrogen metabolism SBML MML
psp00920 Sulfur metabolism SBML MML
psp00930 Caprolactam degradation SBML MML
psp00940 (Undocumented) SBML MML
psp00950 (Undocumented) SBML MML
psp00960 (Undocumented) SBML MML
psp00970 Aminoacyl-tRNA biosynthesis SBML MML
psp00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
psp00982 (Undocumented) SBML MML
psp00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.