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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pst: Pseudomonas syringae pv. tomato DC3000

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pst00010 Glycolysis / Gluconeogenesis SBML MML
pst00020 Citrate cycle (TCA cycle) SBML MML
pst00030 Pentose phosphate pathway SBML MML
pst00031 (Undocumented) SBML MML
pst00040 Pentose and glucuronate interconversions SBML MML
pst00051 Fructose and mannose metabolism SBML MML
pst00052 Galactose metabolism SBML MML
pst00053 Ascorbate and aldarate metabolism SBML MML
pst00061 Fatty acid biosynthesis SBML MML
pst00062 Fatty acid elongation in mitochondria SBML MML
pst00071 Fatty acid metabolism SBML MML
pst00072 Synthesis and degradation of ketone bodies SBML MML
pst00100 (Undocumented) SBML MML
pst00120 (Undocumented) SBML MML
pst00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pst00220 (Undocumented) SBML MML
pst00230 Purine metabolism SBML MML
pst00240 Pyrimidine metabolism SBML MML
pst00251 (Undocumented) SBML MML
pst00252 (Undocumented) SBML MML
pst00260 Glycine, serine and threonine metabolism SBML MML
pst00271 (Undocumented) SBML MML
pst00272 (Undocumented) SBML MML
pst00280 Valine, leucine and isoleucine degradation SBML MML
pst00281 Geraniol degradation SBML MML
pst00290 Valine, leucine and isoleucine biosynthesis SBML MML
pst00300 Lysine biosynthesis SBML MML
pst00310 Lysine degradation SBML MML
pst00330 Arginine and proline metabolism SBML MML
pst00340 Histidine metabolism SBML MML
pst00350 Tyrosine metabolism SBML MML
pst00360 Phenylalanine metabolism SBML MML
pst00361 gamma-Hexachlorocyclohexane degradation SBML MML
pst00362 (Undocumented) SBML MML
pst00363 Bisphenol A degradation SBML MML
pst00364 Fluorobenzoate degradation SBML MML
pst00380 Tryptophan metabolism SBML MML
pst00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pst00401 Novobiocin biosynthesis SBML MML
pst00410 beta-Alanine metabolism SBML MML
pst00430 Taurine and hypotaurine metabolism SBML MML
pst00450 Selenoamino acid metabolism SBML MML
pst00460 (Undocumented) SBML MML
pst00471 D-Glutamine and D-glutamate metabolism SBML MML
pst00473 D-Alanine metabolism SBML MML
pst00480 Glutathione metabolism SBML MML
pst00500 Starch and sucrose metabolism SBML MML
pst00520 Amino sugar and nucleotide sugar metabolism SBML MML
pst00521 Streptomycin biosynthesis SBML MML
pst00523 Polyketide sugar unit biosynthesis SBML MML
pst00530 (Undocumented) SBML MML
pst00540 Lipopolysaccharide biosynthesis SBML MML
pst00550 Peptidoglycan biosynthesis SBML MML
pst00561 Glycerolipid metabolism SBML MML
pst00562 Inositol phosphate metabolism SBML MML
pst00564 Glycerophospholipid metabolism SBML MML
pst00590 Arachidonic acid metabolism SBML MML
pst00592 alpha-Linolenic acid metabolism SBML MML
pst00620 Pyruvate metabolism SBML MML
pst00622 Toluene and xylene degradation SBML MML
pst00623 2,4-Dichlorobenzoate degradation SBML MML
pst00624 1- and 2-Methylnaphthalene degradation SBML MML
pst00627 1,4-Dichlorobenzene degradation SBML MML
pst00630 Glyoxylate and dicarboxylate metabolism SBML MML
pst00631 1,2-Dichloroethane degradation SBML MML
pst00632 (Undocumented) SBML MML
pst00633 Trinitrotoluene degradation SBML MML
pst00640 Propanoate metabolism SBML MML
pst00641 3-Chloroacrylic acid degradation SBML MML
pst00643 Styrene degradation SBML MML
pst00650 Butanoate metabolism SBML MML
pst00660 C5-Branched dibasic acid metabolism SBML MML
pst00670 One carbon pool by folate SBML MML
pst00680 Methane metabolism SBML MML
pst00710 (Undocumented) SBML MML
pst00720 (Undocumented) SBML MML
pst00730 Thiamine metabolism SBML MML
pst00740 Riboflavin metabolism SBML MML
pst00750 Vitamin B6 metabolism SBML MML
pst00760 Nicotinate and nicotinamide metabolism SBML MML
pst00770 Pantothenate and CoA biosynthesis SBML MML
pst00780 Biotin metabolism SBML MML
pst00785 Lipoic acid metabolism SBML MML
pst00790 Folate biosynthesis SBML MML
pst00860 Porphyrin and chlorophyll metabolism SBML MML
pst00900 Terpenoid backbone biosynthesis SBML MML
pst00903 (Undocumented) SBML MML
pst00910 Nitrogen metabolism SBML MML
pst00920 Sulfur metabolism SBML MML
pst00930 Caprolactam degradation SBML MML
pst00950 (Undocumented) SBML MML
pst00960 (Undocumented) SBML MML
pst00970 Aminoacyl-tRNA biosynthesis SBML MML
pst00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pst00982 (Undocumented) SBML MML
pst00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.