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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pub: Candidatus Pelagibacter ubique

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pub00010 Glycolysis / Gluconeogenesis SBML MML
pub00020 Citrate cycle (TCA cycle) SBML MML
pub00030 Pentose phosphate pathway SBML MML
pub00031 (Undocumented) SBML MML
pub00040 Pentose and glucuronate interconversions SBML MML
pub00051 Fructose and mannose metabolism SBML MML
pub00052 Galactose metabolism SBML MML
pub00053 Ascorbate and aldarate metabolism SBML MML
pub00061 Fatty acid biosynthesis SBML MML
pub00062 Fatty acid elongation in mitochondria SBML MML
pub00071 Fatty acid metabolism SBML MML
pub00100 (Undocumented) SBML MML
pub00120 (Undocumented) SBML MML
pub00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pub00150 Androgen and estrogen metabolism SBML MML
pub00220 (Undocumented) SBML MML
pub00230 Purine metabolism SBML MML
pub00240 Pyrimidine metabolism SBML MML
pub00251 (Undocumented) SBML MML
pub00252 (Undocumented) SBML MML
pub00260 Glycine, serine and threonine metabolism SBML MML
pub00271 (Undocumented) SBML MML
pub00272 (Undocumented) SBML MML
pub00280 Valine, leucine and isoleucine degradation SBML MML
pub00281 Geraniol degradation SBML MML
pub00290 Valine, leucine and isoleucine biosynthesis SBML MML
pub00300 Lysine biosynthesis SBML MML
pub00310 Lysine degradation SBML MML
pub00330 Arginine and proline metabolism SBML MML
pub00340 Histidine metabolism SBML MML
pub00350 Tyrosine metabolism SBML MML
pub00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
pub00360 Phenylalanine metabolism SBML MML
pub00362 (Undocumented) SBML MML
pub00380 Tryptophan metabolism SBML MML
pub00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pub00401 Novobiocin biosynthesis SBML MML
pub00410 beta-Alanine metabolism SBML MML
pub00430 Taurine and hypotaurine metabolism SBML MML
pub00440 Phosphonate and phosphinate metabolism SBML MML
pub00450 Selenoamino acid metabolism SBML MML
pub00471 D-Glutamine and D-glutamate metabolism SBML MML
pub00472 D-Arginine and D-ornithine metabolism SBML MML
pub00480 Glutathione metabolism SBML MML
pub00500 Starch and sucrose metabolism SBML MML
pub00520 Amino sugar and nucleotide sugar metabolism SBML MML
pub00521 Streptomycin biosynthesis SBML MML
pub00530 (Undocumented) SBML MML
pub00540 Lipopolysaccharide biosynthesis SBML MML
pub00550 Peptidoglycan biosynthesis SBML MML
pub00561 Glycerolipid metabolism SBML MML
pub00562 Inositol phosphate metabolism SBML MML
pub00564 Glycerophospholipid metabolism SBML MML
pub00590 Arachidonic acid metabolism SBML MML
pub00620 Pyruvate metabolism SBML MML
pub00624 1- and 2-Methylnaphthalene degradation SBML MML
pub00626 Naphthalene and anthracene degradation SBML MML
pub00628 Fluorene degradation SBML MML
pub00630 Glyoxylate and dicarboxylate metabolism SBML MML
pub00631 1,2-Dichloroethane degradation SBML MML
pub00632 (Undocumented) SBML MML
pub00640 Propanoate metabolism SBML MML
pub00641 3-Chloroacrylic acid degradation SBML MML
pub00650 Butanoate metabolism SBML MML
pub00660 C5-Branched dibasic acid metabolism SBML MML
pub00670 One carbon pool by folate SBML MML
pub00680 Methane metabolism SBML MML
pub00710 (Undocumented) SBML MML
pub00720 (Undocumented) SBML MML
pub00730 Thiamine metabolism SBML MML
pub00740 Riboflavin metabolism SBML MML
pub00750 Vitamin B6 metabolism SBML MML
pub00760 Nicotinate and nicotinamide metabolism SBML MML
pub00770 Pantothenate and CoA biosynthesis SBML MML
pub00780 Biotin metabolism SBML MML
pub00785 Lipoic acid metabolism SBML MML
pub00790 Folate biosynthesis SBML MML
pub00860 Porphyrin and chlorophyll metabolism SBML MML
pub00900 Terpenoid backbone biosynthesis SBML MML
pub00903 (Undocumented) SBML MML
pub00906 Carotenoid biosynthesis SBML MML
pub00910 Nitrogen metabolism SBML MML
pub00920 Sulfur metabolism SBML MML
pub00930 Caprolactam degradation SBML MML
pub00940 (Undocumented) SBML MML
pub00950 (Undocumented) SBML MML
pub00960 (Undocumented) SBML MML
pub00970 Aminoacyl-tRNA biosynthesis SBML MML
pub00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pub00982 (Undocumented) SBML MML
pub00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.