This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rba: Rhodopirellula baltica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rba00010 Glycolysis / Gluconeogenesis SBML MML
rba00020 Citrate cycle (TCA cycle) SBML MML
rba00030 Pentose phosphate pathway SBML MML
rba00031 (Undocumented) SBML MML
rba00040 Pentose and glucuronate interconversions SBML MML
rba00051 Fructose and mannose metabolism SBML MML
rba00052 Galactose metabolism SBML MML
rba00053 Ascorbate and aldarate metabolism SBML MML
rba00061 Fatty acid biosynthesis SBML MML
rba00062 Fatty acid elongation in mitochondria SBML MML
rba00071 Fatty acid metabolism SBML MML
rba00100 (Undocumented) SBML MML
rba00120 (Undocumented) SBML MML
rba00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rba00140 (Undocumented) SBML MML
rba00150 Androgen and estrogen metabolism SBML MML
rba00220 (Undocumented) SBML MML
rba00230 Purine metabolism SBML MML
rba00240 Pyrimidine metabolism SBML MML
rba00251 (Undocumented) SBML MML
rba00252 (Undocumented) SBML MML
rba00260 Glycine, serine and threonine metabolism SBML MML
rba00271 (Undocumented) SBML MML
rba00272 (Undocumented) SBML MML
rba00280 Valine, leucine and isoleucine degradation SBML MML
rba00281 Geraniol degradation SBML MML
rba00290 Valine, leucine and isoleucine biosynthesis SBML MML
rba00300 Lysine biosynthesis SBML MML
rba00310 Lysine degradation SBML MML
rba00311 Penicillin and cephalosporin biosynthesis SBML MML
rba00330 Arginine and proline metabolism SBML MML
rba00340 Histidine metabolism SBML MML
rba00350 Tyrosine metabolism SBML MML
rba00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
rba00360 Phenylalanine metabolism SBML MML
rba00361 gamma-Hexachlorocyclohexane degradation SBML MML
rba00362 (Undocumented) SBML MML
rba00363 Bisphenol A degradation SBML MML
rba00364 Fluorobenzoate degradation SBML MML
rba00380 Tryptophan metabolism SBML MML
rba00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rba00401 Novobiocin biosynthesis SBML MML
rba00410 beta-Alanine metabolism SBML MML
rba00430 Taurine and hypotaurine metabolism SBML MML
rba00440 Phosphonate and phosphinate metabolism SBML MML
rba00450 Selenoamino acid metabolism SBML MML
rba00460 (Undocumented) SBML MML
rba00480 Glutathione metabolism SBML MML
rba00500 Starch and sucrose metabolism SBML MML
rba00510 (Undocumented) SBML MML
rba00520 Amino sugar and nucleotide sugar metabolism SBML MML
rba00521 Streptomycin biosynthesis SBML MML
rba00523 Polyketide sugar unit biosynthesis SBML MML
rba00530 (Undocumented) SBML MML
rba00540 Lipopolysaccharide biosynthesis SBML MML
rba00550 Peptidoglycan biosynthesis SBML MML
rba00561 Glycerolipid metabolism SBML MML
rba00562 Inositol phosphate metabolism SBML MML
rba00564 Glycerophospholipid metabolism SBML MML
rba00590 Arachidonic acid metabolism SBML MML
rba00600 Sphingolipid metabolism SBML MML
rba00620 Pyruvate metabolism SBML MML
rba00622 Toluene and xylene degradation SBML MML
rba00623 2,4-Dichlorobenzoate degradation SBML MML
rba00624 1- and 2-Methylnaphthalene degradation SBML MML
rba00625 (Undocumented) SBML MML
rba00626 Naphthalene and anthracene degradation SBML MML
rba00627 1,4-Dichlorobenzene degradation SBML MML
rba00628 Fluorene degradation SBML MML
rba00630 Glyoxylate and dicarboxylate metabolism SBML MML
rba00631 1,2-Dichloroethane degradation SBML MML
rba00632 (Undocumented) SBML MML
rba00640 Propanoate metabolism SBML MML
rba00641 3-Chloroacrylic acid degradation SBML MML
rba00650 Butanoate metabolism SBML MML
rba00660 C5-Branched dibasic acid metabolism SBML MML
rba00670 One carbon pool by folate SBML MML
rba00680 Methane metabolism SBML MML
rba00710 (Undocumented) SBML MML
rba00720 (Undocumented) SBML MML
rba00730 Thiamine metabolism SBML MML
rba00740 Riboflavin metabolism SBML MML
rba00750 Vitamin B6 metabolism SBML MML
rba00760 Nicotinate and nicotinamide metabolism SBML MML
rba00770 Pantothenate and CoA biosynthesis SBML MML
rba00780 Biotin metabolism SBML MML
rba00785 Lipoic acid metabolism SBML MML
rba00790 Folate biosynthesis SBML MML
rba00791 Atrazine degradation SBML MML
rba00860 Porphyrin and chlorophyll metabolism SBML MML
rba00900 Terpenoid backbone biosynthesis SBML MML
rba00903 (Undocumented) SBML MML
rba00906 Carotenoid biosynthesis SBML MML
rba00910 Nitrogen metabolism SBML MML
rba00920 Sulfur metabolism SBML MML
rba00930 Caprolactam degradation SBML MML
rba00940 (Undocumented) SBML MML
rba00941 (Undocumented) SBML MML
rba00950 (Undocumented) SBML MML
rba00960 (Undocumented) SBML MML
rba00970 Aminoacyl-tRNA biosynthesis SBML MML
rba00982 (Undocumented) SBML MML
rba00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.