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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rbe: Rickettsia bellii RML369-C

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rbe00010 Glycolysis / Gluconeogenesis SBML MML
rbe00020 Citrate cycle (TCA cycle) SBML MML
rbe00030 Pentose phosphate pathway SBML MML
rbe00051 Fructose and mannose metabolism SBML MML
rbe00061 Fatty acid biosynthesis SBML MML
rbe00071 Fatty acid metabolism SBML MML
rbe00072 Synthesis and degradation of ketone bodies SBML MML
rbe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rbe00230 Purine metabolism SBML MML
rbe00240 Pyrimidine metabolism SBML MML
rbe00251 (Undocumented) SBML MML
rbe00252 (Undocumented) SBML MML
rbe00260 Glycine, serine and threonine metabolism SBML MML
rbe00271 (Undocumented) SBML MML
rbe00272 (Undocumented) SBML MML
rbe00280 Valine, leucine and isoleucine degradation SBML MML
rbe00290 Valine, leucine and isoleucine biosynthesis SBML MML
rbe00300 Lysine biosynthesis SBML MML
rbe00310 Lysine degradation SBML MML
rbe00330 Arginine and proline metabolism SBML MML
rbe00340 Histidine metabolism SBML MML
rbe00350 Tyrosine metabolism SBML MML
rbe00360 Phenylalanine metabolism SBML MML
rbe00362 (Undocumented) SBML MML
rbe00380 Tryptophan metabolism SBML MML
rbe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rbe00430 Taurine and hypotaurine metabolism SBML MML
rbe00450 Selenoamino acid metabolism SBML MML
rbe00460 (Undocumented) SBML MML
rbe00471 D-Glutamine and D-glutamate metabolism SBML MML
rbe00473 D-Alanine metabolism SBML MML
rbe00500 Starch and sucrose metabolism SBML MML
rbe00520 Amino sugar and nucleotide sugar metabolism SBML MML
rbe00521 Streptomycin biosynthesis SBML MML
rbe00530 (Undocumented) SBML MML
rbe00540 Lipopolysaccharide biosynthesis SBML MML
rbe00550 Peptidoglycan biosynthesis SBML MML
rbe00561 Glycerolipid metabolism SBML MML
rbe00562 Inositol phosphate metabolism SBML MML
rbe00564 Glycerophospholipid metabolism SBML MML
rbe00620 Pyruvate metabolism SBML MML
rbe00624 1- and 2-Methylnaphthalene degradation SBML MML
rbe00630 Glyoxylate and dicarboxylate metabolism SBML MML
rbe00632 (Undocumented) SBML MML
rbe00640 Propanoate metabolism SBML MML
rbe00650 Butanoate metabolism SBML MML
rbe00670 One carbon pool by folate SBML MML
rbe00710 (Undocumented) SBML MML
rbe00720 (Undocumented) SBML MML
rbe00760 Nicotinate and nicotinamide metabolism SBML MML
rbe00770 Pantothenate and CoA biosynthesis SBML MML
rbe00780 Biotin metabolism SBML MML
rbe00785 Lipoic acid metabolism SBML MML
rbe00790 Folate biosynthesis SBML MML
rbe00860 Porphyrin and chlorophyll metabolism SBML MML
rbe00900 Terpenoid backbone biosynthesis SBML MML
rbe00960 (Undocumented) SBML MML
rbe00970 Aminoacyl-tRNA biosynthesis SBML MML
rbe00980 Metabolism of xenobiotics by cytochrome P450 SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.