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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rec: Rhizobium etli CIAT 652

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rec00010 Glycolysis / Gluconeogenesis SBML MML
rec00020 Citrate cycle (TCA cycle) SBML MML
rec00030 Pentose phosphate pathway SBML MML
rec00031 (Undocumented) SBML MML
rec00040 Pentose and glucuronate interconversions SBML MML
rec00051 Fructose and mannose metabolism SBML MML
rec00052 Galactose metabolism SBML MML
rec00053 Ascorbate and aldarate metabolism SBML MML
rec00061 Fatty acid biosynthesis SBML MML
rec00071 Fatty acid metabolism SBML MML
rec00072 Synthesis and degradation of ketone bodies SBML MML
rec00100 (Undocumented) SBML MML
rec00120 (Undocumented) SBML MML
rec00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rec00140 (Undocumented) SBML MML
rec00150 Androgen and estrogen metabolism SBML MML
rec00220 (Undocumented) SBML MML
rec00230 Purine metabolism SBML MML
rec00240 Pyrimidine metabolism SBML MML
rec00251 (Undocumented) SBML MML
rec00252 (Undocumented) SBML MML
rec00260 Glycine, serine and threonine metabolism SBML MML
rec00271 (Undocumented) SBML MML
rec00272 (Undocumented) SBML MML
rec00280 Valine, leucine and isoleucine degradation SBML MML
rec00281 Geraniol degradation SBML MML
rec00290 Valine, leucine and isoleucine biosynthesis SBML MML
rec00300 Lysine biosynthesis SBML MML
rec00310 Lysine degradation SBML MML
rec00330 Arginine and proline metabolism SBML MML
rec00340 Histidine metabolism SBML MML
rec00350 Tyrosine metabolism SBML MML
rec00360 Phenylalanine metabolism SBML MML
rec00361 gamma-Hexachlorocyclohexane degradation SBML MML
rec00362 (Undocumented) SBML MML
rec00363 Bisphenol A degradation SBML MML
rec00364 Fluorobenzoate degradation SBML MML
rec00380 Tryptophan metabolism SBML MML
rec00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rec00401 Novobiocin biosynthesis SBML MML
rec00410 beta-Alanine metabolism SBML MML
rec00430 Taurine and hypotaurine metabolism SBML MML
rec00440 Phosphonate and phosphinate metabolism SBML MML
rec00450 Selenoamino acid metabolism SBML MML
rec00460 (Undocumented) SBML MML
rec00471 D-Glutamine and D-glutamate metabolism SBML MML
rec00472 D-Arginine and D-ornithine metabolism SBML MML
rec00473 D-Alanine metabolism SBML MML
rec00480 Glutathione metabolism SBML MML
rec00500 Starch and sucrose metabolism SBML MML
rec00520 Amino sugar and nucleotide sugar metabolism SBML MML
rec00521 Streptomycin biosynthesis SBML MML
rec00523 Polyketide sugar unit biosynthesis SBML MML
rec00530 (Undocumented) SBML MML
rec00540 Lipopolysaccharide biosynthesis SBML MML
rec00550 Peptidoglycan biosynthesis SBML MML
rec00561 Glycerolipid metabolism SBML MML
rec00562 Inositol phosphate metabolism SBML MML
rec00564 Glycerophospholipid metabolism SBML MML
rec00590 Arachidonic acid metabolism SBML MML
rec00592 alpha-Linolenic acid metabolism SBML MML
rec00600 Sphingolipid metabolism SBML MML
rec00620 Pyruvate metabolism SBML MML
rec00622 Toluene and xylene degradation SBML MML
rec00623 2,4-Dichlorobenzoate degradation SBML MML
rec00624 1- and 2-Methylnaphthalene degradation SBML MML
rec00625 (Undocumented) SBML MML
rec00626 Naphthalene and anthracene degradation SBML MML
rec00627 1,4-Dichlorobenzene degradation SBML MML
rec00628 Fluorene degradation SBML MML
rec00630 Glyoxylate and dicarboxylate metabolism SBML MML
rec00631 1,2-Dichloroethane degradation SBML MML
rec00632 (Undocumented) SBML MML
rec00640 Propanoate metabolism SBML MML
rec00641 3-Chloroacrylic acid degradation SBML MML
rec00642 Ethylbenzene degradation SBML MML
rec00643 Styrene degradation SBML MML
rec00650 Butanoate metabolism SBML MML
rec00660 C5-Branched dibasic acid metabolism SBML MML
rec00670 One carbon pool by folate SBML MML
rec00680 Methane metabolism SBML MML
rec00710 (Undocumented) SBML MML
rec00720 (Undocumented) SBML MML
rec00730 Thiamine metabolism SBML MML
rec00740 Riboflavin metabolism SBML MML
rec00750 Vitamin B6 metabolism SBML MML
rec00760 Nicotinate and nicotinamide metabolism SBML MML
rec00770 Pantothenate and CoA biosynthesis SBML MML
rec00780 Biotin metabolism SBML MML
rec00790 Folate biosynthesis SBML MML
rec00860 Porphyrin and chlorophyll metabolism SBML MML
rec00900 Terpenoid backbone biosynthesis SBML MML
rec00903 (Undocumented) SBML MML
rec00910 Nitrogen metabolism SBML MML
rec00920 Sulfur metabolism SBML MML
rec00930 Caprolactam degradation SBML MML
rec00940 (Undocumented) SBML MML
rec00950 (Undocumented) SBML MML
rec00960 (Undocumented) SBML MML
rec00970 Aminoacyl-tRNA biosynthesis SBML MML
rec00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rec00982 (Undocumented) SBML MML
rec00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.