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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rfr: Rhodoferax ferrireducens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rfr00010 Glycolysis / Gluconeogenesis SBML MML
rfr00020 Citrate cycle (TCA cycle) SBML MML
rfr00030 Pentose phosphate pathway SBML MML
rfr00031 (Undocumented) SBML MML
rfr00040 Pentose and glucuronate interconversions SBML MML
rfr00051 Fructose and mannose metabolism SBML MML
rfr00052 Galactose metabolism SBML MML
rfr00053 Ascorbate and aldarate metabolism SBML MML
rfr00061 Fatty acid biosynthesis SBML MML
rfr00062 Fatty acid elongation in mitochondria SBML MML
rfr00071 Fatty acid metabolism SBML MML
rfr00072 Synthesis and degradation of ketone bodies SBML MML
rfr00100 (Undocumented) SBML MML
rfr00120 (Undocumented) SBML MML
rfr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rfr00220 (Undocumented) SBML MML
rfr00230 Purine metabolism SBML MML
rfr00240 Pyrimidine metabolism SBML MML
rfr00251 (Undocumented) SBML MML
rfr00252 (Undocumented) SBML MML
rfr00260 Glycine, serine and threonine metabolism SBML MML
rfr00271 (Undocumented) SBML MML
rfr00272 (Undocumented) SBML MML
rfr00280 Valine, leucine and isoleucine degradation SBML MML
rfr00281 Geraniol degradation SBML MML
rfr00290 Valine, leucine and isoleucine biosynthesis SBML MML
rfr00300 Lysine biosynthesis SBML MML
rfr00310 Lysine degradation SBML MML
rfr00311 Penicillin and cephalosporin biosynthesis SBML MML
rfr00330 Arginine and proline metabolism SBML MML
rfr00340 Histidine metabolism SBML MML
rfr00350 Tyrosine metabolism SBML MML
rfr00360 Phenylalanine metabolism SBML MML
rfr00361 gamma-Hexachlorocyclohexane degradation SBML MML
rfr00362 (Undocumented) SBML MML
rfr00363 Bisphenol A degradation SBML MML
rfr00364 Fluorobenzoate degradation SBML MML
rfr00380 Tryptophan metabolism SBML MML
rfr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rfr00401 Novobiocin biosynthesis SBML MML
rfr00410 beta-Alanine metabolism SBML MML
rfr00430 Taurine and hypotaurine metabolism SBML MML
rfr00450 Selenoamino acid metabolism SBML MML
rfr00460 (Undocumented) SBML MML
rfr00471 D-Glutamine and D-glutamate metabolism SBML MML
rfr00472 D-Arginine and D-ornithine metabolism SBML MML
rfr00473 D-Alanine metabolism SBML MML
rfr00480 Glutathione metabolism SBML MML
rfr00500 Starch and sucrose metabolism SBML MML
rfr00520 Amino sugar and nucleotide sugar metabolism SBML MML
rfr00521 Streptomycin biosynthesis SBML MML
rfr00523 Polyketide sugar unit biosynthesis SBML MML
rfr00530 (Undocumented) SBML MML
rfr00540 Lipopolysaccharide biosynthesis SBML MML
rfr00550 Peptidoglycan biosynthesis SBML MML
rfr00561 Glycerolipid metabolism SBML MML
rfr00562 Inositol phosphate metabolism SBML MML
rfr00564 Glycerophospholipid metabolism SBML MML
rfr00565 Ether lipid metabolism SBML MML
rfr00590 Arachidonic acid metabolism SBML MML
rfr00592 alpha-Linolenic acid metabolism SBML MML
rfr00620 Pyruvate metabolism SBML MML
rfr00623 2,4-Dichlorobenzoate degradation SBML MML
rfr00624 1- and 2-Methylnaphthalene degradation SBML MML
rfr00626 Naphthalene and anthracene degradation SBML MML
rfr00627 1,4-Dichlorobenzene degradation SBML MML
rfr00628 Fluorene degradation SBML MML
rfr00630 Glyoxylate and dicarboxylate metabolism SBML MML
rfr00631 1,2-Dichloroethane degradation SBML MML
rfr00632 (Undocumented) SBML MML
rfr00633 Trinitrotoluene degradation SBML MML
rfr00640 Propanoate metabolism SBML MML
rfr00641 3-Chloroacrylic acid degradation SBML MML
rfr00642 Ethylbenzene degradation SBML MML
rfr00643 Styrene degradation SBML MML
rfr00650 Butanoate metabolism SBML MML
rfr00660 C5-Branched dibasic acid metabolism SBML MML
rfr00670 One carbon pool by folate SBML MML
rfr00680 Methane metabolism SBML MML
rfr00710 (Undocumented) SBML MML
rfr00720 (Undocumented) SBML MML
rfr00730 Thiamine metabolism SBML MML
rfr00740 Riboflavin metabolism SBML MML
rfr00750 Vitamin B6 metabolism SBML MML
rfr00760 Nicotinate and nicotinamide metabolism SBML MML
rfr00770 Pantothenate and CoA biosynthesis SBML MML
rfr00780 Biotin metabolism SBML MML
rfr00785 Lipoic acid metabolism SBML MML
rfr00790 Folate biosynthesis SBML MML
rfr00791 Atrazine degradation SBML MML
rfr00860 Porphyrin and chlorophyll metabolism SBML MML
rfr00900 Terpenoid backbone biosynthesis SBML MML
rfr00903 (Undocumented) SBML MML
rfr00910 Nitrogen metabolism SBML MML
rfr00920 Sulfur metabolism SBML MML
rfr00930 Caprolactam degradation SBML MML
rfr00940 (Undocumented) SBML MML
rfr00950 (Undocumented) SBML MML
rfr00960 (Undocumented) SBML MML
rfr00970 Aminoacyl-tRNA biosynthesis SBML MML
rfr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rfr00982 (Undocumented) SBML MML
rfr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.