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Kegg pathway models for JSim

Organism rma: Candidatus Ruthia magnifica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rma00010 Glycolysis / Gluconeogenesis SBML MML
rma00020 Citrate cycle (TCA cycle) SBML MML
rma00030 Pentose phosphate pathway SBML MML
rma00040 Pentose and glucuronate interconversions SBML MML
rma00051 Fructose and mannose metabolism SBML MML
rma00052 Galactose metabolism SBML MML
rma00061 Fatty acid biosynthesis SBML MML
rma00100 (Undocumented) SBML MML
rma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rma00220 (Undocumented) SBML MML
rma00230 Purine metabolism SBML MML
rma00240 Pyrimidine metabolism SBML MML
rma00251 (Undocumented) SBML MML
rma00252 (Undocumented) SBML MML
rma00260 Glycine, serine and threonine metabolism SBML MML
rma00271 (Undocumented) SBML MML
rma00272 (Undocumented) SBML MML
rma00280 Valine, leucine and isoleucine degradation SBML MML
rma00290 Valine, leucine and isoleucine biosynthesis SBML MML
rma00300 Lysine biosynthesis SBML MML
rma00310 Lysine degradation SBML MML
rma00330 Arginine and proline metabolism SBML MML
rma00340 Histidine metabolism SBML MML
rma00350 Tyrosine metabolism SBML MML
rma00360 Phenylalanine metabolism SBML MML
rma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rma00401 Novobiocin biosynthesis SBML MML
rma00410 beta-Alanine metabolism SBML MML
rma00450 Selenoamino acid metabolism SBML MML
rma00471 D-Glutamine and D-glutamate metabolism SBML MML
rma00472 D-Arginine and D-ornithine metabolism SBML MML
rma00473 D-Alanine metabolism SBML MML
rma00480 Glutathione metabolism SBML MML
rma00500 Starch and sucrose metabolism SBML MML
rma00530 (Undocumented) SBML MML
rma00540 Lipopolysaccharide biosynthesis SBML MML
rma00550 Peptidoglycan biosynthesis SBML MML
rma00561 Glycerolipid metabolism SBML MML
rma00562 Inositol phosphate metabolism SBML MML
rma00564 Glycerophospholipid metabolism SBML MML
rma00620 Pyruvate metabolism SBML MML
rma00630 Glyoxylate and dicarboxylate metabolism SBML MML
rma00640 Propanoate metabolism SBML MML
rma00650 Butanoate metabolism SBML MML
rma00660 C5-Branched dibasic acid metabolism SBML MML
rma00670 One carbon pool by folate SBML MML
rma00680 Methane metabolism SBML MML
rma00710 (Undocumented) SBML MML
rma00720 (Undocumented) SBML MML
rma00730 Thiamine metabolism SBML MML
rma00740 Riboflavin metabolism SBML MML
rma00750 Vitamin B6 metabolism SBML MML
rma00760 Nicotinate and nicotinamide metabolism SBML MML
rma00770 Pantothenate and CoA biosynthesis SBML MML
rma00780 Biotin metabolism SBML MML
rma00785 Lipoic acid metabolism SBML MML
rma00790 Folate biosynthesis SBML MML
rma00860 Porphyrin and chlorophyll metabolism SBML MML
rma00900 Terpenoid backbone biosynthesis SBML MML
rma00910 Nitrogen metabolism SBML MML
rma00920 Sulfur metabolism SBML MML
rma00970 Aminoacyl-tRNA biosynthesis SBML MML
rma00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rma00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.