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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rpb: Rhodopseudomonas palustris HaA2

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rpb00010 Glycolysis / Gluconeogenesis SBML MML
rpb00020 Citrate cycle (TCA cycle) SBML MML
rpb00030 Pentose phosphate pathway SBML MML
rpb00031 (Undocumented) SBML MML
rpb00040 Pentose and glucuronate interconversions SBML MML
rpb00051 Fructose and mannose metabolism SBML MML
rpb00052 Galactose metabolism SBML MML
rpb00053 Ascorbate and aldarate metabolism SBML MML
rpb00061 Fatty acid biosynthesis SBML MML
rpb00062 Fatty acid elongation in mitochondria SBML MML
rpb00071 Fatty acid metabolism SBML MML
rpb00072 Synthesis and degradation of ketone bodies SBML MML
rpb00100 (Undocumented) SBML MML
rpb00120 (Undocumented) SBML MML
rpb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rpb00220 (Undocumented) SBML MML
rpb00230 Purine metabolism SBML MML
rpb00240 Pyrimidine metabolism SBML MML
rpb00251 (Undocumented) SBML MML
rpb00252 (Undocumented) SBML MML
rpb00260 Glycine, serine and threonine metabolism SBML MML
rpb00271 (Undocumented) SBML MML
rpb00272 (Undocumented) SBML MML
rpb00280 Valine, leucine and isoleucine degradation SBML MML
rpb00281 Geraniol degradation SBML MML
rpb00290 Valine, leucine and isoleucine biosynthesis SBML MML
rpb00300 Lysine biosynthesis SBML MML
rpb00310 Lysine degradation SBML MML
rpb00330 Arginine and proline metabolism SBML MML
rpb00340 Histidine metabolism SBML MML
rpb00350 Tyrosine metabolism SBML MML
rpb00360 Phenylalanine metabolism SBML MML
rpb00361 gamma-Hexachlorocyclohexane degradation SBML MML
rpb00362 (Undocumented) SBML MML
rpb00364 Fluorobenzoate degradation SBML MML
rpb00380 Tryptophan metabolism SBML MML
rpb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rpb00401 Novobiocin biosynthesis SBML MML
rpb00410 beta-Alanine metabolism SBML MML
rpb00430 Taurine and hypotaurine metabolism SBML MML
rpb00450 Selenoamino acid metabolism SBML MML
rpb00460 (Undocumented) SBML MML
rpb00471 D-Glutamine and D-glutamate metabolism SBML MML
rpb00473 D-Alanine metabolism SBML MML
rpb00480 Glutathione metabolism SBML MML
rpb00500 Starch and sucrose metabolism SBML MML
rpb00520 Amino sugar and nucleotide sugar metabolism SBML MML
rpb00521 Streptomycin biosynthesis SBML MML
rpb00523 Polyketide sugar unit biosynthesis SBML MML
rpb00530 (Undocumented) SBML MML
rpb00540 Lipopolysaccharide biosynthesis SBML MML
rpb00550 Peptidoglycan biosynthesis SBML MML
rpb00561 Glycerolipid metabolism SBML MML
rpb00562 Inositol phosphate metabolism SBML MML
rpb00564 Glycerophospholipid metabolism SBML MML
rpb00590 Arachidonic acid metabolism SBML MML
rpb00620 Pyruvate metabolism SBML MML
rpb00622 Toluene and xylene degradation SBML MML
rpb00623 2,4-Dichlorobenzoate degradation SBML MML
rpb00624 1- and 2-Methylnaphthalene degradation SBML MML
rpb00625 (Undocumented) SBML MML
rpb00626 Naphthalene and anthracene degradation SBML MML
rpb00627 1,4-Dichlorobenzene degradation SBML MML
rpb00628 Fluorene degradation SBML MML
rpb00630 Glyoxylate and dicarboxylate metabolism SBML MML
rpb00631 1,2-Dichloroethane degradation SBML MML
rpb00632 (Undocumented) SBML MML
rpb00633 Trinitrotoluene degradation SBML MML
rpb00640 Propanoate metabolism SBML MML
rpb00641 3-Chloroacrylic acid degradation SBML MML
rpb00643 Styrene degradation SBML MML
rpb00650 Butanoate metabolism SBML MML
rpb00660 C5-Branched dibasic acid metabolism SBML MML
rpb00670 One carbon pool by folate SBML MML
rpb00680 Methane metabolism SBML MML
rpb00710 (Undocumented) SBML MML
rpb00720 (Undocumented) SBML MML
rpb00730 Thiamine metabolism SBML MML
rpb00740 Riboflavin metabolism SBML MML
rpb00750 Vitamin B6 metabolism SBML MML
rpb00760 Nicotinate and nicotinamide metabolism SBML MML
rpb00770 Pantothenate and CoA biosynthesis SBML MML
rpb00780 Biotin metabolism SBML MML
rpb00785 Lipoic acid metabolism SBML MML
rpb00790 Folate biosynthesis SBML MML
rpb00860 Porphyrin and chlorophyll metabolism SBML MML
rpb00900 Terpenoid backbone biosynthesis SBML MML
rpb00903 (Undocumented) SBML MML
rpb00906 Carotenoid biosynthesis SBML MML
rpb00910 Nitrogen metabolism SBML MML
rpb00920 Sulfur metabolism SBML MML
rpb00930 Caprolactam degradation SBML MML
rpb00940 (Undocumented) SBML MML
rpb00950 (Undocumented) SBML MML
rpb00960 (Undocumented) SBML MML
rpb00970 Aminoacyl-tRNA biosynthesis SBML MML
rpb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rpb00982 (Undocumented) SBML MML
rpb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.