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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rpc: Rhodopseudomonas palustris BisB18

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rpc00010 Glycolysis / Gluconeogenesis SBML MML
rpc00020 Citrate cycle (TCA cycle) SBML MML
rpc00030 Pentose phosphate pathway SBML MML
rpc00031 (Undocumented) SBML MML
rpc00040 Pentose and glucuronate interconversions SBML MML
rpc00051 Fructose and mannose metabolism SBML MML
rpc00052 Galactose metabolism SBML MML
rpc00053 Ascorbate and aldarate metabolism SBML MML
rpc00061 Fatty acid biosynthesis SBML MML
rpc00062 Fatty acid elongation in mitochondria SBML MML
rpc00071 Fatty acid metabolism SBML MML
rpc00072 Synthesis and degradation of ketone bodies SBML MML
rpc00100 (Undocumented) SBML MML
rpc00120 (Undocumented) SBML MML
rpc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rpc00220 (Undocumented) SBML MML
rpc00230 Purine metabolism SBML MML
rpc00240 Pyrimidine metabolism SBML MML
rpc00251 (Undocumented) SBML MML
rpc00252 (Undocumented) SBML MML
rpc00260 Glycine, serine and threonine metabolism SBML MML
rpc00271 (Undocumented) SBML MML
rpc00272 (Undocumented) SBML MML
rpc00280 Valine, leucine and isoleucine degradation SBML MML
rpc00281 Geraniol degradation SBML MML
rpc00290 Valine, leucine and isoleucine biosynthesis SBML MML
rpc00300 Lysine biosynthesis SBML MML
rpc00310 Lysine degradation SBML MML
rpc00330 Arginine and proline metabolism SBML MML
rpc00340 Histidine metabolism SBML MML
rpc00350 Tyrosine metabolism SBML MML
rpc00360 Phenylalanine metabolism SBML MML
rpc00361 gamma-Hexachlorocyclohexane degradation SBML MML
rpc00362 (Undocumented) SBML MML
rpc00364 Fluorobenzoate degradation SBML MML
rpc00380 Tryptophan metabolism SBML MML
rpc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rpc00401 Novobiocin biosynthesis SBML MML
rpc00410 beta-Alanine metabolism SBML MML
rpc00430 Taurine and hypotaurine metabolism SBML MML
rpc00450 Selenoamino acid metabolism SBML MML
rpc00460 (Undocumented) SBML MML
rpc00471 D-Glutamine and D-glutamate metabolism SBML MML
rpc00473 D-Alanine metabolism SBML MML
rpc00480 Glutathione metabolism SBML MML
rpc00500 Starch and sucrose metabolism SBML MML
rpc00520 Amino sugar and nucleotide sugar metabolism SBML MML
rpc00521 Streptomycin biosynthesis SBML MML
rpc00523 Polyketide sugar unit biosynthesis SBML MML
rpc00530 (Undocumented) SBML MML
rpc00540 Lipopolysaccharide biosynthesis SBML MML
rpc00550 Peptidoglycan biosynthesis SBML MML
rpc00561 Glycerolipid metabolism SBML MML
rpc00562 Inositol phosphate metabolism SBML MML
rpc00564 Glycerophospholipid metabolism SBML MML
rpc00590 Arachidonic acid metabolism SBML MML
rpc00592 alpha-Linolenic acid metabolism SBML MML
rpc00620 Pyruvate metabolism SBML MML
rpc00622 Toluene and xylene degradation SBML MML
rpc00624 1- and 2-Methylnaphthalene degradation SBML MML
rpc00626 Naphthalene and anthracene degradation SBML MML
rpc00627 1,4-Dichlorobenzene degradation SBML MML
rpc00628 Fluorene degradation SBML MML
rpc00630 Glyoxylate and dicarboxylate metabolism SBML MML
rpc00631 1,2-Dichloroethane degradation SBML MML
rpc00632 (Undocumented) SBML MML
rpc00633 Trinitrotoluene degradation SBML MML
rpc00640 Propanoate metabolism SBML MML
rpc00641 3-Chloroacrylic acid degradation SBML MML
rpc00642 Ethylbenzene degradation SBML MML
rpc00643 Styrene degradation SBML MML
rpc00650 Butanoate metabolism SBML MML
rpc00660 C5-Branched dibasic acid metabolism SBML MML
rpc00670 One carbon pool by folate SBML MML
rpc00680 Methane metabolism SBML MML
rpc00710 (Undocumented) SBML MML
rpc00720 (Undocumented) SBML MML
rpc00730 Thiamine metabolism SBML MML
rpc00740 Riboflavin metabolism SBML MML
rpc00750 Vitamin B6 metabolism SBML MML
rpc00760 Nicotinate and nicotinamide metabolism SBML MML
rpc00770 Pantothenate and CoA biosynthesis SBML MML
rpc00780 Biotin metabolism SBML MML
rpc00785 Lipoic acid metabolism SBML MML
rpc00790 Folate biosynthesis SBML MML
rpc00860 Porphyrin and chlorophyll metabolism SBML MML
rpc00900 Terpenoid backbone biosynthesis SBML MML
rpc00903 (Undocumented) SBML MML
rpc00906 Carotenoid biosynthesis SBML MML
rpc00910 Nitrogen metabolism SBML MML
rpc00920 Sulfur metabolism SBML MML
rpc00930 Caprolactam degradation SBML MML
rpc00940 (Undocumented) SBML MML
rpc00960 (Undocumented) SBML MML
rpc00970 Aminoacyl-tRNA biosynthesis SBML MML
rpc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rpc00982 (Undocumented) SBML MML
rpc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.