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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rpd: Rhodopseudomonas palustris BisB5

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rpd00010 Glycolysis / Gluconeogenesis SBML MML
rpd00020 Citrate cycle (TCA cycle) SBML MML
rpd00030 Pentose phosphate pathway SBML MML
rpd00031 (Undocumented) SBML MML
rpd00040 Pentose and glucuronate interconversions SBML MML
rpd00051 Fructose and mannose metabolism SBML MML
rpd00052 Galactose metabolism SBML MML
rpd00061 Fatty acid biosynthesis SBML MML
rpd00062 Fatty acid elongation in mitochondria SBML MML
rpd00071 Fatty acid metabolism SBML MML
rpd00072 Synthesis and degradation of ketone bodies SBML MML
rpd00100 (Undocumented) SBML MML
rpd00120 (Undocumented) SBML MML
rpd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rpd00220 (Undocumented) SBML MML
rpd00230 Purine metabolism SBML MML
rpd00240 Pyrimidine metabolism SBML MML
rpd00251 (Undocumented) SBML MML
rpd00252 (Undocumented) SBML MML
rpd00260 Glycine, serine and threonine metabolism SBML MML
rpd00271 (Undocumented) SBML MML
rpd00272 (Undocumented) SBML MML
rpd00280 Valine, leucine and isoleucine degradation SBML MML
rpd00281 Geraniol degradation SBML MML
rpd00290 Valine, leucine and isoleucine biosynthesis SBML MML
rpd00300 Lysine biosynthesis SBML MML
rpd00310 Lysine degradation SBML MML
rpd00330 Arginine and proline metabolism SBML MML
rpd00340 Histidine metabolism SBML MML
rpd00350 Tyrosine metabolism SBML MML
rpd00360 Phenylalanine metabolism SBML MML
rpd00361 gamma-Hexachlorocyclohexane degradation SBML MML
rpd00362 (Undocumented) SBML MML
rpd00364 Fluorobenzoate degradation SBML MML
rpd00380 Tryptophan metabolism SBML MML
rpd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rpd00401 Novobiocin biosynthesis SBML MML
rpd00410 beta-Alanine metabolism SBML MML
rpd00430 Taurine and hypotaurine metabolism SBML MML
rpd00450 Selenoamino acid metabolism SBML MML
rpd00460 (Undocumented) SBML MML
rpd00471 D-Glutamine and D-glutamate metabolism SBML MML
rpd00472 D-Arginine and D-ornithine metabolism SBML MML
rpd00473 D-Alanine metabolism SBML MML
rpd00480 Glutathione metabolism SBML MML
rpd00500 Starch and sucrose metabolism SBML MML
rpd00520 Amino sugar and nucleotide sugar metabolism SBML MML
rpd00521 Streptomycin biosynthesis SBML MML
rpd00523 Polyketide sugar unit biosynthesis SBML MML
rpd00530 (Undocumented) SBML MML
rpd00540 Lipopolysaccharide biosynthesis SBML MML
rpd00550 Peptidoglycan biosynthesis SBML MML
rpd00561 Glycerolipid metabolism SBML MML
rpd00562 Inositol phosphate metabolism SBML MML
rpd00564 Glycerophospholipid metabolism SBML MML
rpd00565 Ether lipid metabolism SBML MML
rpd00590 Arachidonic acid metabolism SBML MML
rpd00592 alpha-Linolenic acid metabolism SBML MML
rpd00620 Pyruvate metabolism SBML MML
rpd00622 Toluene and xylene degradation SBML MML
rpd00623 2,4-Dichlorobenzoate degradation SBML MML
rpd00624 1- and 2-Methylnaphthalene degradation SBML MML
rpd00626 Naphthalene and anthracene degradation SBML MML
rpd00627 1,4-Dichlorobenzene degradation SBML MML
rpd00628 Fluorene degradation SBML MML
rpd00629 Carbazole degradation SBML MML
rpd00630 Glyoxylate and dicarboxylate metabolism SBML MML
rpd00632 (Undocumented) SBML MML
rpd00633 Trinitrotoluene degradation SBML MML
rpd00640 Propanoate metabolism SBML MML
rpd00641 3-Chloroacrylic acid degradation SBML MML
rpd00642 Ethylbenzene degradation SBML MML
rpd00643 Styrene degradation SBML MML
rpd00650 Butanoate metabolism SBML MML
rpd00660 C5-Branched dibasic acid metabolism SBML MML
rpd00670 One carbon pool by folate SBML MML
rpd00680 Methane metabolism SBML MML
rpd00710 (Undocumented) SBML MML
rpd00720 (Undocumented) SBML MML
rpd00730 Thiamine metabolism SBML MML
rpd00740 Riboflavin metabolism SBML MML
rpd00750 Vitamin B6 metabolism SBML MML
rpd00760 Nicotinate and nicotinamide metabolism SBML MML
rpd00770 Pantothenate and CoA biosynthesis SBML MML
rpd00780 Biotin metabolism SBML MML
rpd00785 Lipoic acid metabolism SBML MML
rpd00790 Folate biosynthesis SBML MML
rpd00860 Porphyrin and chlorophyll metabolism SBML MML
rpd00900 Terpenoid backbone biosynthesis SBML MML
rpd00903 (Undocumented) SBML MML
rpd00906 Carotenoid biosynthesis SBML MML
rpd00910 Nitrogen metabolism SBML MML
rpd00920 Sulfur metabolism SBML MML
rpd00930 Caprolactam degradation SBML MML
rpd00940 (Undocumented) SBML MML
rpd00960 (Undocumented) SBML MML
rpd00970 Aminoacyl-tRNA biosynthesis SBML MML
rpd00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rpd00982 (Undocumented) SBML MML
rpd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.