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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rrj: Rickettsia rickettsii Iowa

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rrj00010 Glycolysis / Gluconeogenesis SBML MML
rrj00020 Citrate cycle (TCA cycle) SBML MML
rrj00030 Pentose phosphate pathway SBML MML
rrj00051 Fructose and mannose metabolism SBML MML
rrj00061 Fatty acid biosynthesis SBML MML
rrj00062 Fatty acid elongation in mitochondria SBML MML
rrj00071 Fatty acid metabolism SBML MML
rrj00072 Synthesis and degradation of ketone bodies SBML MML
rrj00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rrj00230 Purine metabolism SBML MML
rrj00240 Pyrimidine metabolism SBML MML
rrj00251 (Undocumented) SBML MML
rrj00252 (Undocumented) SBML MML
rrj00260 Glycine, serine and threonine metabolism SBML MML
rrj00271 (Undocumented) SBML MML
rrj00272 (Undocumented) SBML MML
rrj00280 Valine, leucine and isoleucine degradation SBML MML
rrj00290 Valine, leucine and isoleucine biosynthesis SBML MML
rrj00300 Lysine biosynthesis SBML MML
rrj00310 Lysine degradation SBML MML
rrj00330 Arginine and proline metabolism SBML MML
rrj00350 Tyrosine metabolism SBML MML
rrj00380 Tryptophan metabolism SBML MML
rrj00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rrj00450 Selenoamino acid metabolism SBML MML
rrj00471 D-Glutamine and D-glutamate metabolism SBML MML
rrj00473 D-Alanine metabolism SBML MML
rrj00480 Glutathione metabolism SBML MML
rrj00520 Amino sugar and nucleotide sugar metabolism SBML MML
rrj00521 Streptomycin biosynthesis SBML MML
rrj00530 (Undocumented) SBML MML
rrj00540 Lipopolysaccharide biosynthesis SBML MML
rrj00550 Peptidoglycan biosynthesis SBML MML
rrj00562 Inositol phosphate metabolism SBML MML
rrj00564 Glycerophospholipid metabolism SBML MML
rrj00620 Pyruvate metabolism SBML MML
rrj00630 Glyoxylate and dicarboxylate metabolism SBML MML
rrj00640 Propanoate metabolism SBML MML
rrj00650 Butanoate metabolism SBML MML
rrj00670 One carbon pool by folate SBML MML
rrj00710 (Undocumented) SBML MML
rrj00720 (Undocumented) SBML MML
rrj00760 Nicotinate and nicotinamide metabolism SBML MML
rrj00770 Pantothenate and CoA biosynthesis SBML MML
rrj00780 Biotin metabolism SBML MML
rrj00785 Lipoic acid metabolism SBML MML
rrj00790 Folate biosynthesis SBML MML
rrj00791 Atrazine degradation SBML MML
rrj00860 Porphyrin and chlorophyll metabolism SBML MML
rrj00900 Terpenoid backbone biosynthesis SBML MML
rrj00910 Nitrogen metabolism SBML MML
rrj00970 Aminoacyl-tRNA biosynthesis SBML MML
rrj00980 Metabolism of xenobiotics by cytochrome P450 SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.