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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rty: Rickettsia typhi

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rty00010 Glycolysis / Gluconeogenesis SBML MML
rty00020 Citrate cycle (TCA cycle) SBML MML
rty00061 Fatty acid biosynthesis SBML MML
rty00062 Fatty acid elongation in mitochondria SBML MML
rty00071 Fatty acid metabolism SBML MML
rty00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rty00230 Purine metabolism SBML MML
rty00240 Pyrimidine metabolism SBML MML
rty00251 (Undocumented) SBML MML
rty00252 (Undocumented) SBML MML
rty00260 Glycine, serine and threonine metabolism SBML MML
rty00271 (Undocumented) SBML MML
rty00272 (Undocumented) SBML MML
rty00280 Valine, leucine and isoleucine degradation SBML MML
rty00281 Geraniol degradation SBML MML
rty00290 Valine, leucine and isoleucine biosynthesis SBML MML
rty00300 Lysine biosynthesis SBML MML
rty00310 Lysine degradation SBML MML
rty00330 Arginine and proline metabolism SBML MML
rty00340 Histidine metabolism SBML MML
rty00350 Tyrosine metabolism SBML MML
rty00362 (Undocumented) SBML MML
rty00380 Tryptophan metabolism SBML MML
rty00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rty00430 Taurine and hypotaurine metabolism SBML MML
rty00450 Selenoamino acid metabolism SBML MML
rty00460 (Undocumented) SBML MML
rty00471 D-Glutamine and D-glutamate metabolism SBML MML
rty00473 D-Alanine metabolism SBML MML
rty00500 Starch and sucrose metabolism SBML MML
rty00520 Amino sugar and nucleotide sugar metabolism SBML MML
rty00530 (Undocumented) SBML MML
rty00540 Lipopolysaccharide biosynthesis SBML MML
rty00550 Peptidoglycan biosynthesis SBML MML
rty00564 Glycerophospholipid metabolism SBML MML
rty00620 Pyruvate metabolism SBML MML
rty00630 Glyoxylate and dicarboxylate metabolism SBML MML
rty00632 (Undocumented) SBML MML
rty00640 Propanoate metabolism SBML MML
rty00650 Butanoate metabolism SBML MML
rty00670 One carbon pool by folate SBML MML
rty00710 (Undocumented) SBML MML
rty00720 (Undocumented) SBML MML
rty00760 Nicotinate and nicotinamide metabolism SBML MML
rty00770 Pantothenate and CoA biosynthesis SBML MML
rty00780 Biotin metabolism SBML MML
rty00785 Lipoic acid metabolism SBML MML
rty00790 Folate biosynthesis SBML MML
rty00860 Porphyrin and chlorophyll metabolism SBML MML
rty00900 Terpenoid backbone biosynthesis SBML MML
rty00903 (Undocumented) SBML MML
rty00930 Caprolactam degradation SBML MML
rty00970 Aminoacyl-tRNA biosynthesis SBML MML
rty00980 Metabolism of xenobiotics by cytochrome P450 SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.