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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rxy: Rubrobacter xylanophilus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rxy00010 Glycolysis / Gluconeogenesis SBML MML
rxy00020 Citrate cycle (TCA cycle) SBML MML
rxy00030 Pentose phosphate pathway SBML MML
rxy00031 (Undocumented) SBML MML
rxy00040 Pentose and glucuronate interconversions SBML MML
rxy00051 Fructose and mannose metabolism SBML MML
rxy00052 Galactose metabolism SBML MML
rxy00053 Ascorbate and aldarate metabolism SBML MML
rxy00061 Fatty acid biosynthesis SBML MML
rxy00062 Fatty acid elongation in mitochondria SBML MML
rxy00071 Fatty acid metabolism SBML MML
rxy00072 Synthesis and degradation of ketone bodies SBML MML
rxy00100 (Undocumented) SBML MML
rxy00120 (Undocumented) SBML MML
rxy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rxy00220 (Undocumented) SBML MML
rxy00230 Purine metabolism SBML MML
rxy00240 Pyrimidine metabolism SBML MML
rxy00251 (Undocumented) SBML MML
rxy00252 (Undocumented) SBML MML
rxy00260 Glycine, serine and threonine metabolism SBML MML
rxy00271 (Undocumented) SBML MML
rxy00272 (Undocumented) SBML MML
rxy00280 Valine, leucine and isoleucine degradation SBML MML
rxy00281 Geraniol degradation SBML MML
rxy00290 Valine, leucine and isoleucine biosynthesis SBML MML
rxy00300 Lysine biosynthesis SBML MML
rxy00310 Lysine degradation SBML MML
rxy00311 Penicillin and cephalosporin biosynthesis SBML MML
rxy00330 Arginine and proline metabolism SBML MML
rxy00340 Histidine metabolism SBML MML
rxy00350 Tyrosine metabolism SBML MML
rxy00360 Phenylalanine metabolism SBML MML
rxy00361 gamma-Hexachlorocyclohexane degradation SBML MML
rxy00362 (Undocumented) SBML MML
rxy00380 Tryptophan metabolism SBML MML
rxy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rxy00401 Novobiocin biosynthesis SBML MML
rxy00410 beta-Alanine metabolism SBML MML
rxy00430 Taurine and hypotaurine metabolism SBML MML
rxy00450 Selenoamino acid metabolism SBML MML
rxy00460 (Undocumented) SBML MML
rxy00471 D-Glutamine and D-glutamate metabolism SBML MML
rxy00472 D-Arginine and D-ornithine metabolism SBML MML
rxy00473 D-Alanine metabolism SBML MML
rxy00480 Glutathione metabolism SBML MML
rxy00500 Starch and sucrose metabolism SBML MML
rxy00520 Amino sugar and nucleotide sugar metabolism SBML MML
rxy00521 Streptomycin biosynthesis SBML MML
rxy00523 Polyketide sugar unit biosynthesis SBML MML
rxy00530 (Undocumented) SBML MML
rxy00550 Peptidoglycan biosynthesis SBML MML
rxy00561 Glycerolipid metabolism SBML MML
rxy00562 Inositol phosphate metabolism SBML MML
rxy00564 Glycerophospholipid metabolism SBML MML
rxy00592 alpha-Linolenic acid metabolism SBML MML
rxy00620 Pyruvate metabolism SBML MML
rxy00622 Toluene and xylene degradation SBML MML
rxy00623 2,4-Dichlorobenzoate degradation SBML MML
rxy00624 1- and 2-Methylnaphthalene degradation SBML MML
rxy00627 1,4-Dichlorobenzene degradation SBML MML
rxy00630 Glyoxylate and dicarboxylate metabolism SBML MML
rxy00631 1,2-Dichloroethane degradation SBML MML
rxy00632 (Undocumented) SBML MML
rxy00640 Propanoate metabolism SBML MML
rxy00641 3-Chloroacrylic acid degradation SBML MML
rxy00643 Styrene degradation SBML MML
rxy00650 Butanoate metabolism SBML MML
rxy00660 C5-Branched dibasic acid metabolism SBML MML
rxy00670 One carbon pool by folate SBML MML
rxy00680 Methane metabolism SBML MML
rxy00710 (Undocumented) SBML MML
rxy00720 (Undocumented) SBML MML
rxy00730 Thiamine metabolism SBML MML
rxy00740 Riboflavin metabolism SBML MML
rxy00750 Vitamin B6 metabolism SBML MML
rxy00760 Nicotinate and nicotinamide metabolism SBML MML
rxy00770 Pantothenate and CoA biosynthesis SBML MML
rxy00785 Lipoic acid metabolism SBML MML
rxy00790 Folate biosynthesis SBML MML
rxy00791 Atrazine degradation SBML MML
rxy00860 Porphyrin and chlorophyll metabolism SBML MML
rxy00900 Terpenoid backbone biosynthesis SBML MML
rxy00903 (Undocumented) SBML MML
rxy00906 Carotenoid biosynthesis SBML MML
rxy00910 Nitrogen metabolism SBML MML
rxy00920 Sulfur metabolism SBML MML
rxy00930 Caprolactam degradation SBML MML
rxy00941 (Undocumented) SBML MML
rxy00950 (Undocumented) SBML MML
rxy00970 Aminoacyl-tRNA biosynthesis SBML MML
rxy00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rxy00982 (Undocumented) SBML MML
rxy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.