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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sac: Staphylococcus aureus COL

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sac00010 Glycolysis / Gluconeogenesis SBML MML
sac00020 Citrate cycle (TCA cycle) SBML MML
sac00030 Pentose phosphate pathway SBML MML
sac00040 Pentose and glucuronate interconversions SBML MML
sac00051 Fructose and mannose metabolism SBML MML
sac00052 Galactose metabolism SBML MML
sac00053 Ascorbate and aldarate metabolism SBML MML
sac00061 Fatty acid biosynthesis SBML MML
sac00062 Fatty acid elongation in mitochondria SBML MML
sac00071 Fatty acid metabolism SBML MML
sac00072 Synthesis and degradation of ketone bodies SBML MML
sac00100 (Undocumented) SBML MML
sac00120 (Undocumented) SBML MML
sac00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sac00220 (Undocumented) SBML MML
sac00230 Purine metabolism SBML MML
sac00240 Pyrimidine metabolism SBML MML
sac00251 (Undocumented) SBML MML
sac00252 (Undocumented) SBML MML
sac00260 Glycine, serine and threonine metabolism SBML MML
sac00271 (Undocumented) SBML MML
sac00272 (Undocumented) SBML MML
sac00280 Valine, leucine and isoleucine degradation SBML MML
sac00281 Geraniol degradation SBML MML
sac00290 Valine, leucine and isoleucine biosynthesis SBML MML
sac00300 Lysine biosynthesis SBML MML
sac00310 Lysine degradation SBML MML
sac00330 Arginine and proline metabolism SBML MML
sac00340 Histidine metabolism SBML MML
sac00350 Tyrosine metabolism SBML MML
sac00360 Phenylalanine metabolism SBML MML
sac00362 (Undocumented) SBML MML
sac00380 Tryptophan metabolism SBML MML
sac00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sac00410 beta-Alanine metabolism SBML MML
sac00430 Taurine and hypotaurine metabolism SBML MML
sac00440 Phosphonate and phosphinate metabolism SBML MML
sac00450 Selenoamino acid metabolism SBML MML
sac00460 (Undocumented) SBML MML
sac00471 D-Glutamine and D-glutamate metabolism SBML MML
sac00472 D-Arginine and D-ornithine metabolism SBML MML
sac00473 D-Alanine metabolism SBML MML
sac00480 Glutathione metabolism SBML MML
sac00500 Starch and sucrose metabolism SBML MML
sac00510 (Undocumented) SBML MML
sac00520 Amino sugar and nucleotide sugar metabolism SBML MML
sac00521 Streptomycin biosynthesis SBML MML
sac00530 (Undocumented) SBML MML
sac00550 Peptidoglycan biosynthesis SBML MML
sac00561 Glycerolipid metabolism SBML MML
sac00562 Inositol phosphate metabolism SBML MML
sac00564 Glycerophospholipid metabolism SBML MML
sac00590 Arachidonic acid metabolism SBML MML
sac00592 alpha-Linolenic acid metabolism SBML MML
sac00620 Pyruvate metabolism SBML MML
sac00624 1- and 2-Methylnaphthalene degradation SBML MML
sac00630 Glyoxylate and dicarboxylate metabolism SBML MML
sac00632 (Undocumented) SBML MML
sac00640 Propanoate metabolism SBML MML
sac00641 3-Chloroacrylic acid degradation SBML MML
sac00642 Ethylbenzene degradation SBML MML
sac00650 Butanoate metabolism SBML MML
sac00660 C5-Branched dibasic acid metabolism SBML MML
sac00670 One carbon pool by folate SBML MML
sac00680 Methane metabolism SBML MML
sac00710 (Undocumented) SBML MML
sac00720 (Undocumented) SBML MML
sac00730 Thiamine metabolism SBML MML
sac00740 Riboflavin metabolism SBML MML
sac00750 Vitamin B6 metabolism SBML MML
sac00760 Nicotinate and nicotinamide metabolism SBML MML
sac00770 Pantothenate and CoA biosynthesis SBML MML
sac00780 Biotin metabolism SBML MML
sac00785 Lipoic acid metabolism SBML MML
sac00790 Folate biosynthesis SBML MML
sac00860 Porphyrin and chlorophyll metabolism SBML MML
sac00900 Terpenoid backbone biosynthesis SBML MML
sac00903 (Undocumented) SBML MML
sac00906 Carotenoid biosynthesis SBML MML
sac00910 Nitrogen metabolism SBML MML
sac00920 Sulfur metabolism SBML MML
sac00930 Caprolactam degradation SBML MML
sac00960 (Undocumented) SBML MML
sac00970 Aminoacyl-tRNA biosynthesis SBML MML
sac00982 (Undocumented) SBML MML
sac00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.