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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sae: Staphylococcus aureus Newman

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sae00010 Glycolysis / Gluconeogenesis SBML MML
sae00020 Citrate cycle (TCA cycle) SBML MML
sae00030 Pentose phosphate pathway SBML MML
sae00040 Pentose and glucuronate interconversions SBML MML
sae00051 Fructose and mannose metabolism SBML MML
sae00052 Galactose metabolism SBML MML
sae00053 Ascorbate and aldarate metabolism SBML MML
sae00061 Fatty acid biosynthesis SBML MML
sae00062 Fatty acid elongation in mitochondria SBML MML
sae00071 Fatty acid metabolism SBML MML
sae00072 Synthesis and degradation of ketone bodies SBML MML
sae00100 (Undocumented) SBML MML
sae00120 (Undocumented) SBML MML
sae00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sae00150 Androgen and estrogen metabolism SBML MML
sae00220 (Undocumented) SBML MML
sae00230 Purine metabolism SBML MML
sae00240 Pyrimidine metabolism SBML MML
sae00251 (Undocumented) SBML MML
sae00252 (Undocumented) SBML MML
sae00260 Glycine, serine and threonine metabolism SBML MML
sae00271 (Undocumented) SBML MML
sae00272 (Undocumented) SBML MML
sae00280 Valine, leucine and isoleucine degradation SBML MML
sae00281 Geraniol degradation SBML MML
sae00290 Valine, leucine and isoleucine biosynthesis SBML MML
sae00300 Lysine biosynthesis SBML MML
sae00310 Lysine degradation SBML MML
sae00330 Arginine and proline metabolism SBML MML
sae00340 Histidine metabolism SBML MML
sae00350 Tyrosine metabolism SBML MML
sae00360 Phenylalanine metabolism SBML MML
sae00361 gamma-Hexachlorocyclohexane degradation SBML MML
sae00362 (Undocumented) SBML MML
sae00363 Bisphenol A degradation SBML MML
sae00380 Tryptophan metabolism SBML MML
sae00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sae00410 beta-Alanine metabolism SBML MML
sae00430 Taurine and hypotaurine metabolism SBML MML
sae00450 Selenoamino acid metabolism SBML MML
sae00460 (Undocumented) SBML MML
sae00471 D-Glutamine and D-glutamate metabolism SBML MML
sae00472 D-Arginine and D-ornithine metabolism SBML MML
sae00473 D-Alanine metabolism SBML MML
sae00480 Glutathione metabolism SBML MML
sae00500 Starch and sucrose metabolism SBML MML
sae00510 (Undocumented) SBML MML
sae00520 Amino sugar and nucleotide sugar metabolism SBML MML
sae00521 Streptomycin biosynthesis SBML MML
sae00530 (Undocumented) SBML MML
sae00550 Peptidoglycan biosynthesis SBML MML
sae00561 Glycerolipid metabolism SBML MML
sae00562 Inositol phosphate metabolism SBML MML
sae00564 Glycerophospholipid metabolism SBML MML
sae00565 Ether lipid metabolism SBML MML
sae00590 Arachidonic acid metabolism SBML MML
sae00592 alpha-Linolenic acid metabolism SBML MML
sae00620 Pyruvate metabolism SBML MML
sae00622 Toluene and xylene degradation SBML MML
sae00624 1- and 2-Methylnaphthalene degradation SBML MML
sae00626 Naphthalene and anthracene degradation SBML MML
sae00627 1,4-Dichlorobenzene degradation SBML MML
sae00630 Glyoxylate and dicarboxylate metabolism SBML MML
sae00632 (Undocumented) SBML MML
sae00640 Propanoate metabolism SBML MML
sae00641 3-Chloroacrylic acid degradation SBML MML
sae00642 Ethylbenzene degradation SBML MML
sae00650 Butanoate metabolism SBML MML
sae00660 C5-Branched dibasic acid metabolism SBML MML
sae00670 One carbon pool by folate SBML MML
sae00680 Methane metabolism SBML MML
sae00710 (Undocumented) SBML MML
sae00720 (Undocumented) SBML MML
sae00730 Thiamine metabolism SBML MML
sae00740 Riboflavin metabolism SBML MML
sae00750 Vitamin B6 metabolism SBML MML
sae00760 Nicotinate and nicotinamide metabolism SBML MML
sae00770 Pantothenate and CoA biosynthesis SBML MML
sae00780 Biotin metabolism SBML MML
sae00785 Lipoic acid metabolism SBML MML
sae00790 Folate biosynthesis SBML MML
sae00860 Porphyrin and chlorophyll metabolism SBML MML
sae00900 Terpenoid backbone biosynthesis SBML MML
sae00903 (Undocumented) SBML MML
sae00906 Carotenoid biosynthesis SBML MML
sae00910 Nitrogen metabolism SBML MML
sae00920 Sulfur metabolism SBML MML
sae00930 Caprolactam degradation SBML MML
sae00960 (Undocumented) SBML MML
sae00970 Aminoacyl-tRNA biosynthesis SBML MML
sae00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sae00982 (Undocumented) SBML MML
sae00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.