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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism saj: Staphylococcus aureus JH9

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
saj00010 Glycolysis / Gluconeogenesis SBML MML
saj00020 Citrate cycle (TCA cycle) SBML MML
saj00030 Pentose phosphate pathway SBML MML
saj00040 Pentose and glucuronate interconversions SBML MML
saj00051 Fructose and mannose metabolism SBML MML
saj00052 Galactose metabolism SBML MML
saj00053 Ascorbate and aldarate metabolism SBML MML
saj00061 Fatty acid biosynthesis SBML MML
saj00062 Fatty acid elongation in mitochondria SBML MML
saj00071 Fatty acid metabolism SBML MML
saj00072 Synthesis and degradation of ketone bodies SBML MML
saj00100 (Undocumented) SBML MML
saj00120 (Undocumented) SBML MML
saj00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
saj00150 Androgen and estrogen metabolism SBML MML
saj00220 (Undocumented) SBML MML
saj00230 Purine metabolism SBML MML
saj00240 Pyrimidine metabolism SBML MML
saj00251 (Undocumented) SBML MML
saj00252 (Undocumented) SBML MML
saj00260 Glycine, serine and threonine metabolism SBML MML
saj00271 (Undocumented) SBML MML
saj00272 (Undocumented) SBML MML
saj00280 Valine, leucine and isoleucine degradation SBML MML
saj00281 Geraniol degradation SBML MML
saj00290 Valine, leucine and isoleucine biosynthesis SBML MML
saj00300 Lysine biosynthesis SBML MML
saj00310 Lysine degradation SBML MML
saj00330 Arginine and proline metabolism SBML MML
saj00340 Histidine metabolism SBML MML
saj00350 Tyrosine metabolism SBML MML
saj00360 Phenylalanine metabolism SBML MML
saj00361 gamma-Hexachlorocyclohexane degradation SBML MML
saj00362 (Undocumented) SBML MML
saj00363 Bisphenol A degradation SBML MML
saj00380 Tryptophan metabolism SBML MML
saj00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
saj00410 beta-Alanine metabolism SBML MML
saj00430 Taurine and hypotaurine metabolism SBML MML
saj00450 Selenoamino acid metabolism SBML MML
saj00460 (Undocumented) SBML MML
saj00471 D-Glutamine and D-glutamate metabolism SBML MML
saj00472 D-Arginine and D-ornithine metabolism SBML MML
saj00473 D-Alanine metabolism SBML MML
saj00480 Glutathione metabolism SBML MML
saj00500 Starch and sucrose metabolism SBML MML
saj00510 (Undocumented) SBML MML
saj00520 Amino sugar and nucleotide sugar metabolism SBML MML
saj00521 Streptomycin biosynthesis SBML MML
saj00530 (Undocumented) SBML MML
saj00550 Peptidoglycan biosynthesis SBML MML
saj00561 Glycerolipid metabolism SBML MML
saj00562 Inositol phosphate metabolism SBML MML
saj00564 Glycerophospholipid metabolism SBML MML
saj00565 Ether lipid metabolism SBML MML
saj00590 Arachidonic acid metabolism SBML MML
saj00592 alpha-Linolenic acid metabolism SBML MML
saj00620 Pyruvate metabolism SBML MML
saj00622 Toluene and xylene degradation SBML MML
saj00624 1- and 2-Methylnaphthalene degradation SBML MML
saj00626 Naphthalene and anthracene degradation SBML MML
saj00627 1,4-Dichlorobenzene degradation SBML MML
saj00630 Glyoxylate and dicarboxylate metabolism SBML MML
saj00632 (Undocumented) SBML MML
saj00640 Propanoate metabolism SBML MML
saj00641 3-Chloroacrylic acid degradation SBML MML
saj00642 Ethylbenzene degradation SBML MML
saj00650 Butanoate metabolism SBML MML
saj00660 C5-Branched dibasic acid metabolism SBML MML
saj00670 One carbon pool by folate SBML MML
saj00680 Methane metabolism SBML MML
saj00710 (Undocumented) SBML MML
saj00720 (Undocumented) SBML MML
saj00730 Thiamine metabolism SBML MML
saj00740 Riboflavin metabolism SBML MML
saj00750 Vitamin B6 metabolism SBML MML
saj00760 Nicotinate and nicotinamide metabolism SBML MML
saj00770 Pantothenate and CoA biosynthesis SBML MML
saj00780 Biotin metabolism SBML MML
saj00785 Lipoic acid metabolism SBML MML
saj00790 Folate biosynthesis SBML MML
saj00860 Porphyrin and chlorophyll metabolism SBML MML
saj00900 Terpenoid backbone biosynthesis SBML MML
saj00903 (Undocumented) SBML MML
saj00910 Nitrogen metabolism SBML MML
saj00920 Sulfur metabolism SBML MML
saj00930 Caprolactam degradation SBML MML
saj00960 (Undocumented) SBML MML
saj00970 Aminoacyl-tRNA biosynthesis SBML MML
saj00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
saj00982 (Undocumented) SBML MML
saj00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.