This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sam: Staphylococcus aureus MW2

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sam00010 Glycolysis / Gluconeogenesis SBML MML
sam00020 Citrate cycle (TCA cycle) SBML MML
sam00030 Pentose phosphate pathway SBML MML
sam00040 Pentose and glucuronate interconversions SBML MML
sam00051 Fructose and mannose metabolism SBML MML
sam00052 Galactose metabolism SBML MML
sam00053 Ascorbate and aldarate metabolism SBML MML
sam00061 Fatty acid biosynthesis SBML MML
sam00062 Fatty acid elongation in mitochondria SBML MML
sam00071 Fatty acid metabolism SBML MML
sam00072 Synthesis and degradation of ketone bodies SBML MML
sam00100 (Undocumented) SBML MML
sam00120 (Undocumented) SBML MML
sam00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sam00220 (Undocumented) SBML MML
sam00230 Purine metabolism SBML MML
sam00240 Pyrimidine metabolism SBML MML
sam00251 (Undocumented) SBML MML
sam00252 (Undocumented) SBML MML
sam00260 Glycine, serine and threonine metabolism SBML MML
sam00271 (Undocumented) SBML MML
sam00272 (Undocumented) SBML MML
sam00280 Valine, leucine and isoleucine degradation SBML MML
sam00281 Geraniol degradation SBML MML
sam00290 Valine, leucine and isoleucine biosynthesis SBML MML
sam00300 Lysine biosynthesis SBML MML
sam00310 Lysine degradation SBML MML
sam00330 Arginine and proline metabolism SBML MML
sam00340 Histidine metabolism SBML MML
sam00350 Tyrosine metabolism SBML MML
sam00360 Phenylalanine metabolism SBML MML
sam00362 (Undocumented) SBML MML
sam00380 Tryptophan metabolism SBML MML
sam00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sam00410 beta-Alanine metabolism SBML MML
sam00430 Taurine and hypotaurine metabolism SBML MML
sam00440 Phosphonate and phosphinate metabolism SBML MML
sam00450 Selenoamino acid metabolism SBML MML
sam00460 (Undocumented) SBML MML
sam00471 D-Glutamine and D-glutamate metabolism SBML MML
sam00472 D-Arginine and D-ornithine metabolism SBML MML
sam00473 D-Alanine metabolism SBML MML
sam00480 Glutathione metabolism SBML MML
sam00500 Starch and sucrose metabolism SBML MML
sam00520 Amino sugar and nucleotide sugar metabolism SBML MML
sam00521 Streptomycin biosynthesis SBML MML
sam00530 (Undocumented) SBML MML
sam00550 Peptidoglycan biosynthesis SBML MML
sam00561 Glycerolipid metabolism SBML MML
sam00562 Inositol phosphate metabolism SBML MML
sam00564 Glycerophospholipid metabolism SBML MML
sam00590 Arachidonic acid metabolism SBML MML
sam00592 alpha-Linolenic acid metabolism SBML MML
sam00620 Pyruvate metabolism SBML MML
sam00624 1- and 2-Methylnaphthalene degradation SBML MML
sam00630 Glyoxylate and dicarboxylate metabolism SBML MML
sam00632 (Undocumented) SBML MML
sam00640 Propanoate metabolism SBML MML
sam00641 3-Chloroacrylic acid degradation SBML MML
sam00642 Ethylbenzene degradation SBML MML
sam00650 Butanoate metabolism SBML MML
sam00660 C5-Branched dibasic acid metabolism SBML MML
sam00670 One carbon pool by folate SBML MML
sam00680 Methane metabolism SBML MML
sam00710 (Undocumented) SBML MML
sam00720 (Undocumented) SBML MML
sam00730 Thiamine metabolism SBML MML
sam00740 Riboflavin metabolism SBML MML
sam00750 Vitamin B6 metabolism SBML MML
sam00760 Nicotinate and nicotinamide metabolism SBML MML
sam00770 Pantothenate and CoA biosynthesis SBML MML
sam00780 Biotin metabolism SBML MML
sam00785 Lipoic acid metabolism SBML MML
sam00790 Folate biosynthesis SBML MML
sam00860 Porphyrin and chlorophyll metabolism SBML MML
sam00900 Terpenoid backbone biosynthesis SBML MML
sam00903 (Undocumented) SBML MML
sam00906 Carotenoid biosynthesis SBML MML
sam00910 Nitrogen metabolism SBML MML
sam00920 Sulfur metabolism SBML MML
sam00930 Caprolactam degradation SBML MML
sam00960 (Undocumented) SBML MML
sam00970 Aminoacyl-tRNA biosynthesis SBML MML
sam00982 (Undocumented) SBML MML
sam00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.