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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sax: Staphylococcus aureus USA300 TCH1516

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sax00010 Glycolysis / Gluconeogenesis SBML MML
sax00020 Citrate cycle (TCA cycle) SBML MML
sax00030 Pentose phosphate pathway SBML MML
sax00040 Pentose and glucuronate interconversions SBML MML
sax00051 Fructose and mannose metabolism SBML MML
sax00052 Galactose metabolism SBML MML
sax00053 Ascorbate and aldarate metabolism SBML MML
sax00061 Fatty acid biosynthesis SBML MML
sax00062 Fatty acid elongation in mitochondria SBML MML
sax00071 Fatty acid metabolism SBML MML
sax00072 Synthesis and degradation of ketone bodies SBML MML
sax00100 (Undocumented) SBML MML
sax00120 (Undocumented) SBML MML
sax00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sax00150 Androgen and estrogen metabolism SBML MML
sax00220 (Undocumented) SBML MML
sax00230 Purine metabolism SBML MML
sax00240 Pyrimidine metabolism SBML MML
sax00251 (Undocumented) SBML MML
sax00252 (Undocumented) SBML MML
sax00260 Glycine, serine and threonine metabolism SBML MML
sax00271 (Undocumented) SBML MML
sax00272 (Undocumented) SBML MML
sax00280 Valine, leucine and isoleucine degradation SBML MML
sax00281 Geraniol degradation SBML MML
sax00290 Valine, leucine and isoleucine biosynthesis SBML MML
sax00300 Lysine biosynthesis SBML MML
sax00310 Lysine degradation SBML MML
sax00330 Arginine and proline metabolism SBML MML
sax00340 Histidine metabolism SBML MML
sax00350 Tyrosine metabolism SBML MML
sax00360 Phenylalanine metabolism SBML MML
sax00361 gamma-Hexachlorocyclohexane degradation SBML MML
sax00362 (Undocumented) SBML MML
sax00363 Bisphenol A degradation SBML MML
sax00380 Tryptophan metabolism SBML MML
sax00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sax00410 beta-Alanine metabolism SBML MML
sax00430 Taurine and hypotaurine metabolism SBML MML
sax00450 Selenoamino acid metabolism SBML MML
sax00460 (Undocumented) SBML MML
sax00471 D-Glutamine and D-glutamate metabolism SBML MML
sax00472 D-Arginine and D-ornithine metabolism SBML MML
sax00473 D-Alanine metabolism SBML MML
sax00480 Glutathione metabolism SBML MML
sax00500 Starch and sucrose metabolism SBML MML
sax00510 (Undocumented) SBML MML
sax00520 Amino sugar and nucleotide sugar metabolism SBML MML
sax00521 Streptomycin biosynthesis SBML MML
sax00530 (Undocumented) SBML MML
sax00550 Peptidoglycan biosynthesis SBML MML
sax00561 Glycerolipid metabolism SBML MML
sax00562 Inositol phosphate metabolism SBML MML
sax00564 Glycerophospholipid metabolism SBML MML
sax00590 Arachidonic acid metabolism SBML MML
sax00592 alpha-Linolenic acid metabolism SBML MML
sax00620 Pyruvate metabolism SBML MML
sax00622 Toluene and xylene degradation SBML MML
sax00624 1- and 2-Methylnaphthalene degradation SBML MML
sax00626 Naphthalene and anthracene degradation SBML MML
sax00627 1,4-Dichlorobenzene degradation SBML MML
sax00630 Glyoxylate and dicarboxylate metabolism SBML MML
sax00632 (Undocumented) SBML MML
sax00640 Propanoate metabolism SBML MML
sax00641 3-Chloroacrylic acid degradation SBML MML
sax00642 Ethylbenzene degradation SBML MML
sax00650 Butanoate metabolism SBML MML
sax00660 C5-Branched dibasic acid metabolism SBML MML
sax00670 One carbon pool by folate SBML MML
sax00680 Methane metabolism SBML MML
sax00710 (Undocumented) SBML MML
sax00720 (Undocumented) SBML MML
sax00730 Thiamine metabolism SBML MML
sax00740 Riboflavin metabolism SBML MML
sax00750 Vitamin B6 metabolism SBML MML
sax00760 Nicotinate and nicotinamide metabolism SBML MML
sax00770 Pantothenate and CoA biosynthesis SBML MML
sax00780 Biotin metabolism SBML MML
sax00785 Lipoic acid metabolism SBML MML
sax00790 Folate biosynthesis SBML MML
sax00860 Porphyrin and chlorophyll metabolism SBML MML
sax00900 Terpenoid backbone biosynthesis SBML MML
sax00903 (Undocumented) SBML MML
sax00906 Carotenoid biosynthesis SBML MML
sax00910 Nitrogen metabolism SBML MML
sax00920 Sulfur metabolism SBML MML
sax00930 Caprolactam degradation SBML MML
sax00960 (Undocumented) SBML MML
sax00970 Aminoacyl-tRNA biosynthesis SBML MML
sax00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sax00982 (Undocumented) SBML MML
sax00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.