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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism saz: Shewanella amazonensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
saz00010 Glycolysis / Gluconeogenesis SBML MML
saz00020 Citrate cycle (TCA cycle) SBML MML
saz00030 Pentose phosphate pathway SBML MML
saz00031 (Undocumented) SBML MML
saz00040 Pentose and glucuronate interconversions SBML MML
saz00051 Fructose and mannose metabolism SBML MML
saz00052 Galactose metabolism SBML MML
saz00053 Ascorbate and aldarate metabolism SBML MML
saz00061 Fatty acid biosynthesis SBML MML
saz00062 Fatty acid elongation in mitochondria SBML MML
saz00071 Fatty acid metabolism SBML MML
saz00072 Synthesis and degradation of ketone bodies SBML MML
saz00100 (Undocumented) SBML MML
saz00120 (Undocumented) SBML MML
saz00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
saz00220 (Undocumented) SBML MML
saz00230 Purine metabolism SBML MML
saz00240 Pyrimidine metabolism SBML MML
saz00251 (Undocumented) SBML MML
saz00252 (Undocumented) SBML MML
saz00260 Glycine, serine and threonine metabolism SBML MML
saz00271 (Undocumented) SBML MML
saz00272 (Undocumented) SBML MML
saz00280 Valine, leucine and isoleucine degradation SBML MML
saz00281 Geraniol degradation SBML MML
saz00290 Valine, leucine and isoleucine biosynthesis SBML MML
saz00300 Lysine biosynthesis SBML MML
saz00310 Lysine degradation SBML MML
saz00311 Penicillin and cephalosporin biosynthesis SBML MML
saz00330 Arginine and proline metabolism SBML MML
saz00340 Histidine metabolism SBML MML
saz00350 Tyrosine metabolism SBML MML
saz00360 Phenylalanine metabolism SBML MML
saz00361 gamma-Hexachlorocyclohexane degradation SBML MML
saz00362 (Undocumented) SBML MML
saz00364 Fluorobenzoate degradation SBML MML
saz00380 Tryptophan metabolism SBML MML
saz00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
saz00401 Novobiocin biosynthesis SBML MML
saz00410 beta-Alanine metabolism SBML MML
saz00430 Taurine and hypotaurine metabolism SBML MML
saz00450 Selenoamino acid metabolism SBML MML
saz00460 (Undocumented) SBML MML
saz00471 D-Glutamine and D-glutamate metabolism SBML MML
saz00473 D-Alanine metabolism SBML MML
saz00480 Glutathione metabolism SBML MML
saz00500 Starch and sucrose metabolism SBML MML
saz00520 Amino sugar and nucleotide sugar metabolism SBML MML
saz00521 Streptomycin biosynthesis SBML MML
saz00523 Polyketide sugar unit biosynthesis SBML MML
saz00530 (Undocumented) SBML MML
saz00540 Lipopolysaccharide biosynthesis SBML MML
saz00550 Peptidoglycan biosynthesis SBML MML
saz00561 Glycerolipid metabolism SBML MML
saz00562 Inositol phosphate metabolism SBML MML
saz00564 Glycerophospholipid metabolism SBML MML
saz00565 Ether lipid metabolism SBML MML
saz00590 Arachidonic acid metabolism SBML MML
saz00592 alpha-Linolenic acid metabolism SBML MML
saz00620 Pyruvate metabolism SBML MML
saz00624 1- and 2-Methylnaphthalene degradation SBML MML
saz00626 Naphthalene and anthracene degradation SBML MML
saz00627 1,4-Dichlorobenzene degradation SBML MML
saz00630 Glyoxylate and dicarboxylate metabolism SBML MML
saz00631 1,2-Dichloroethane degradation SBML MML
saz00632 (Undocumented) SBML MML
saz00633 Trinitrotoluene degradation SBML MML
saz00640 Propanoate metabolism SBML MML
saz00641 3-Chloroacrylic acid degradation SBML MML
saz00643 Styrene degradation SBML MML
saz00650 Butanoate metabolism SBML MML
saz00660 C5-Branched dibasic acid metabolism SBML MML
saz00670 One carbon pool by folate SBML MML
saz00680 Methane metabolism SBML MML
saz00710 (Undocumented) SBML MML
saz00720 (Undocumented) SBML MML
saz00730 Thiamine metabolism SBML MML
saz00740 Riboflavin metabolism SBML MML
saz00750 Vitamin B6 metabolism SBML MML
saz00760 Nicotinate and nicotinamide metabolism SBML MML
saz00770 Pantothenate and CoA biosynthesis SBML MML
saz00780 Biotin metabolism SBML MML
saz00785 Lipoic acid metabolism SBML MML
saz00790 Folate biosynthesis SBML MML
saz00791 Atrazine degradation SBML MML
saz00860 Porphyrin and chlorophyll metabolism SBML MML
saz00900 Terpenoid backbone biosynthesis SBML MML
saz00903 (Undocumented) SBML MML
saz00910 Nitrogen metabolism SBML MML
saz00920 Sulfur metabolism SBML MML
saz00930 Caprolactam degradation SBML MML
saz00960 (Undocumented) SBML MML
saz00970 Aminoacyl-tRNA biosynthesis SBML MML
saz00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
saz00982 (Undocumented) SBML MML
saz00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.