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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sdn: Shewanella denitrificans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sdn00010 Glycolysis / Gluconeogenesis SBML MML
sdn00020 Citrate cycle (TCA cycle) SBML MML
sdn00030 Pentose phosphate pathway SBML MML
sdn00031 (Undocumented) SBML MML
sdn00040 Pentose and glucuronate interconversions SBML MML
sdn00051 Fructose and mannose metabolism SBML MML
sdn00052 Galactose metabolism SBML MML
sdn00061 Fatty acid biosynthesis SBML MML
sdn00062 Fatty acid elongation in mitochondria SBML MML
sdn00071 Fatty acid metabolism SBML MML
sdn00072 Synthesis and degradation of ketone bodies SBML MML
sdn00100 (Undocumented) SBML MML
sdn00120 (Undocumented) SBML MML
sdn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sdn00220 (Undocumented) SBML MML
sdn00230 Purine metabolism SBML MML
sdn00240 Pyrimidine metabolism SBML MML
sdn00251 (Undocumented) SBML MML
sdn00252 (Undocumented) SBML MML
sdn00260 Glycine, serine and threonine metabolism SBML MML
sdn00271 (Undocumented) SBML MML
sdn00272 (Undocumented) SBML MML
sdn00280 Valine, leucine and isoleucine degradation SBML MML
sdn00281 Geraniol degradation SBML MML
sdn00290 Valine, leucine and isoleucine biosynthesis SBML MML
sdn00300 Lysine biosynthesis SBML MML
sdn00310 Lysine degradation SBML MML
sdn00311 Penicillin and cephalosporin biosynthesis SBML MML
sdn00330 Arginine and proline metabolism SBML MML
sdn00340 Histidine metabolism SBML MML
sdn00350 Tyrosine metabolism SBML MML
sdn00360 Phenylalanine metabolism SBML MML
sdn00361 gamma-Hexachlorocyclohexane degradation SBML MML
sdn00362 (Undocumented) SBML MML
sdn00364 Fluorobenzoate degradation SBML MML
sdn00380 Tryptophan metabolism SBML MML
sdn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sdn00401 Novobiocin biosynthesis SBML MML
sdn00410 beta-Alanine metabolism SBML MML
sdn00430 Taurine and hypotaurine metabolism SBML MML
sdn00440 Phosphonate and phosphinate metabolism SBML MML
sdn00450 Selenoamino acid metabolism SBML MML
sdn00460 (Undocumented) SBML MML
sdn00471 D-Glutamine and D-glutamate metabolism SBML MML
sdn00473 D-Alanine metabolism SBML MML
sdn00480 Glutathione metabolism SBML MML
sdn00500 Starch and sucrose metabolism SBML MML
sdn00520 Amino sugar and nucleotide sugar metabolism SBML MML
sdn00521 Streptomycin biosynthesis SBML MML
sdn00523 Polyketide sugar unit biosynthesis SBML MML
sdn00530 (Undocumented) SBML MML
sdn00540 Lipopolysaccharide biosynthesis SBML MML
sdn00550 Peptidoglycan biosynthesis SBML MML
sdn00561 Glycerolipid metabolism SBML MML
sdn00562 Inositol phosphate metabolism SBML MML
sdn00564 Glycerophospholipid metabolism SBML MML
sdn00590 Arachidonic acid metabolism SBML MML
sdn00592 alpha-Linolenic acid metabolism SBML MML
sdn00620 Pyruvate metabolism SBML MML
sdn00624 1- and 2-Methylnaphthalene degradation SBML MML
sdn00626 Naphthalene and anthracene degradation SBML MML
sdn00627 1,4-Dichlorobenzene degradation SBML MML
sdn00628 Fluorene degradation SBML MML
sdn00630 Glyoxylate and dicarboxylate metabolism SBML MML
sdn00631 1,2-Dichloroethane degradation SBML MML
sdn00632 (Undocumented) SBML MML
sdn00633 Trinitrotoluene degradation SBML MML
sdn00640 Propanoate metabolism SBML MML
sdn00641 3-Chloroacrylic acid degradation SBML MML
sdn00642 Ethylbenzene degradation SBML MML
sdn00643 Styrene degradation SBML MML
sdn00650 Butanoate metabolism SBML MML
sdn00660 C5-Branched dibasic acid metabolism SBML MML
sdn00670 One carbon pool by folate SBML MML
sdn00680 Methane metabolism SBML MML
sdn00710 (Undocumented) SBML MML
sdn00720 (Undocumented) SBML MML
sdn00730 Thiamine metabolism SBML MML
sdn00740 Riboflavin metabolism SBML MML
sdn00750 Vitamin B6 metabolism SBML MML
sdn00760 Nicotinate and nicotinamide metabolism SBML MML
sdn00770 Pantothenate and CoA biosynthesis SBML MML
sdn00780 Biotin metabolism SBML MML
sdn00785 Lipoic acid metabolism SBML MML
sdn00790 Folate biosynthesis SBML MML
sdn00860 Porphyrin and chlorophyll metabolism SBML MML
sdn00900 Terpenoid backbone biosynthesis SBML MML
sdn00903 (Undocumented) SBML MML
sdn00910 Nitrogen metabolism SBML MML
sdn00920 Sulfur metabolism SBML MML
sdn00930 Caprolactam degradation SBML MML
sdn00970 Aminoacyl-tRNA biosynthesis SBML MML
sdn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sdn00982 (Undocumented) SBML MML
sdn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.