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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sep: Staphylococcus epidermidis ATCC 12228

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sep00010 Glycolysis / Gluconeogenesis SBML MML
sep00020 Citrate cycle (TCA cycle) SBML MML
sep00030 Pentose phosphate pathway SBML MML
sep00040 Pentose and glucuronate interconversions SBML MML
sep00051 Fructose and mannose metabolism SBML MML
sep00052 Galactose metabolism SBML MML
sep00061 Fatty acid biosynthesis SBML MML
sep00062 Fatty acid elongation in mitochondria SBML MML
sep00071 Fatty acid metabolism SBML MML
sep00072 Synthesis and degradation of ketone bodies SBML MML
sep00100 (Undocumented) SBML MML
sep00120 (Undocumented) SBML MML
sep00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sep00150 Androgen and estrogen metabolism SBML MML
sep00220 (Undocumented) SBML MML
sep00230 Purine metabolism SBML MML
sep00240 Pyrimidine metabolism SBML MML
sep00251 (Undocumented) SBML MML
sep00252 (Undocumented) SBML MML
sep00260 Glycine, serine and threonine metabolism SBML MML
sep00271 (Undocumented) SBML MML
sep00272 (Undocumented) SBML MML
sep00280 Valine, leucine and isoleucine degradation SBML MML
sep00290 Valine, leucine and isoleucine biosynthesis SBML MML
sep00300 Lysine biosynthesis SBML MML
sep00310 Lysine degradation SBML MML
sep00330 Arginine and proline metabolism SBML MML
sep00340 Histidine metabolism SBML MML
sep00350 Tyrosine metabolism SBML MML
sep00360 Phenylalanine metabolism SBML MML
sep00361 gamma-Hexachlorocyclohexane degradation SBML MML
sep00363 Bisphenol A degradation SBML MML
sep00380 Tryptophan metabolism SBML MML
sep00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sep00410 beta-Alanine metabolism SBML MML
sep00430 Taurine and hypotaurine metabolism SBML MML
sep00440 Phosphonate and phosphinate metabolism SBML MML
sep00450 Selenoamino acid metabolism SBML MML
sep00460 (Undocumented) SBML MML
sep00471 D-Glutamine and D-glutamate metabolism SBML MML
sep00472 D-Arginine and D-ornithine metabolism SBML MML
sep00473 D-Alanine metabolism SBML MML
sep00480 Glutathione metabolism SBML MML
sep00500 Starch and sucrose metabolism SBML MML
sep00510 (Undocumented) SBML MML
sep00521 Streptomycin biosynthesis SBML MML
sep00530 (Undocumented) SBML MML
sep00550 Peptidoglycan biosynthesis SBML MML
sep00561 Glycerolipid metabolism SBML MML
sep00562 Inositol phosphate metabolism SBML MML
sep00564 Glycerophospholipid metabolism SBML MML
sep00590 Arachidonic acid metabolism SBML MML
sep00620 Pyruvate metabolism SBML MML
sep00622 Toluene and xylene degradation SBML MML
sep00624 1- and 2-Methylnaphthalene degradation SBML MML
sep00626 Naphthalene and anthracene degradation SBML MML
sep00627 1,4-Dichlorobenzene degradation SBML MML
sep00630 Glyoxylate and dicarboxylate metabolism SBML MML
sep00632 (Undocumented) SBML MML
sep00640 Propanoate metabolism SBML MML
sep00641 3-Chloroacrylic acid degradation SBML MML
sep00650 Butanoate metabolism SBML MML
sep00660 C5-Branched dibasic acid metabolism SBML MML
sep00670 One carbon pool by folate SBML MML
sep00680 Methane metabolism SBML MML
sep00710 (Undocumented) SBML MML
sep00720 (Undocumented) SBML MML
sep00730 Thiamine metabolism SBML MML
sep00740 Riboflavin metabolism SBML MML
sep00750 Vitamin B6 metabolism SBML MML
sep00760 Nicotinate and nicotinamide metabolism SBML MML
sep00770 Pantothenate and CoA biosynthesis SBML MML
sep00780 Biotin metabolism SBML MML
sep00785 Lipoic acid metabolism SBML MML
sep00790 Folate biosynthesis SBML MML
sep00860 Porphyrin and chlorophyll metabolism SBML MML
sep00900 Terpenoid backbone biosynthesis SBML MML
sep00903 (Undocumented) SBML MML
sep00910 Nitrogen metabolism SBML MML
sep00920 Sulfur metabolism SBML MML
sep00930 Caprolactam degradation SBML MML
sep00960 (Undocumented) SBML MML
sep00970 Aminoacyl-tRNA biosynthesis SBML MML
sep00982 (Undocumented) SBML MML
sep00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.