This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sfl: Shigella flexneri 301 (serotype 2a)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sfl00010 Glycolysis / Gluconeogenesis SBML MML
sfl00020 Citrate cycle (TCA cycle) SBML MML
sfl00030 Pentose phosphate pathway SBML MML
sfl00040 Pentose and glucuronate interconversions SBML MML
sfl00051 Fructose and mannose metabolism SBML MML
sfl00052 Galactose metabolism SBML MML
sfl00053 Ascorbate and aldarate metabolism SBML MML
sfl00061 Fatty acid biosynthesis SBML MML
sfl00062 Fatty acid elongation in mitochondria SBML MML
sfl00071 Fatty acid metabolism SBML MML
sfl00100 (Undocumented) SBML MML
sfl00120 (Undocumented) SBML MML
sfl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sfl00220 (Undocumented) SBML MML
sfl00230 Purine metabolism SBML MML
sfl00240 Pyrimidine metabolism SBML MML
sfl00251 (Undocumented) SBML MML
sfl00252 (Undocumented) SBML MML
sfl00260 Glycine, serine and threonine metabolism SBML MML
sfl00271 (Undocumented) SBML MML
sfl00272 (Undocumented) SBML MML
sfl00280 Valine, leucine and isoleucine degradation SBML MML
sfl00281 Geraniol degradation SBML MML
sfl00290 Valine, leucine and isoleucine biosynthesis SBML MML
sfl00300 Lysine biosynthesis SBML MML
sfl00310 Lysine degradation SBML MML
sfl00330 Arginine and proline metabolism SBML MML
sfl00340 Histidine metabolism SBML MML
sfl00350 Tyrosine metabolism SBML MML
sfl00360 Phenylalanine metabolism SBML MML
sfl00361 gamma-Hexachlorocyclohexane degradation SBML MML
sfl00362 (Undocumented) SBML MML
sfl00364 Fluorobenzoate degradation SBML MML
sfl00380 Tryptophan metabolism SBML MML
sfl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sfl00401 Novobiocin biosynthesis SBML MML
sfl00410 beta-Alanine metabolism SBML MML
sfl00430 Taurine and hypotaurine metabolism SBML MML
sfl00450 Selenoamino acid metabolism SBML MML
sfl00460 (Undocumented) SBML MML
sfl00471 D-Glutamine and D-glutamate metabolism SBML MML
sfl00473 D-Alanine metabolism SBML MML
sfl00480 Glutathione metabolism SBML MML
sfl00500 Starch and sucrose metabolism SBML MML
sfl00520 Amino sugar and nucleotide sugar metabolism SBML MML
sfl00521 Streptomycin biosynthesis SBML MML
sfl00523 Polyketide sugar unit biosynthesis SBML MML
sfl00530 (Undocumented) SBML MML
sfl00540 Lipopolysaccharide biosynthesis SBML MML
sfl00550 Peptidoglycan biosynthesis SBML MML
sfl00561 Glycerolipid metabolism SBML MML
sfl00562 Inositol phosphate metabolism SBML MML
sfl00564 Glycerophospholipid metabolism SBML MML
sfl00590 Arachidonic acid metabolism SBML MML
sfl00592 alpha-Linolenic acid metabolism SBML MML
sfl00600 Sphingolipid metabolism SBML MML
sfl00620 Pyruvate metabolism SBML MML
sfl00624 1- and 2-Methylnaphthalene degradation SBML MML
sfl00627 1,4-Dichlorobenzene degradation SBML MML
sfl00630 Glyoxylate and dicarboxylate metabolism SBML MML
sfl00632 (Undocumented) SBML MML
sfl00633 Trinitrotoluene degradation SBML MML
sfl00640 Propanoate metabolism SBML MML
sfl00641 3-Chloroacrylic acid degradation SBML MML
sfl00650 Butanoate metabolism SBML MML
sfl00660 C5-Branched dibasic acid metabolism SBML MML
sfl00670 One carbon pool by folate SBML MML
sfl00680 Methane metabolism SBML MML
sfl00710 (Undocumented) SBML MML
sfl00720 (Undocumented) SBML MML
sfl00730 Thiamine metabolism SBML MML
sfl00740 Riboflavin metabolism SBML MML
sfl00750 Vitamin B6 metabolism SBML MML
sfl00760 Nicotinate and nicotinamide metabolism SBML MML
sfl00770 Pantothenate and CoA biosynthesis SBML MML
sfl00780 Biotin metabolism SBML MML
sfl00785 Lipoic acid metabolism SBML MML
sfl00790 Folate biosynthesis SBML MML
sfl00791 Atrazine degradation SBML MML
sfl00860 Porphyrin and chlorophyll metabolism SBML MML
sfl00900 Terpenoid backbone biosynthesis SBML MML
sfl00903 (Undocumented) SBML MML
sfl00910 Nitrogen metabolism SBML MML
sfl00920 Sulfur metabolism SBML MML
sfl00930 Caprolactam degradation SBML MML
sfl00950 (Undocumented) SBML MML
sfl00970 Aminoacyl-tRNA biosynthesis SBML MML
sfl00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sfl00982 (Undocumented) SBML MML
sfl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.