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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sfr: Shewanella frigidimarina

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sfr00010 Glycolysis / Gluconeogenesis SBML MML
sfr00020 Citrate cycle (TCA cycle) SBML MML
sfr00030 Pentose phosphate pathway SBML MML
sfr00031 (Undocumented) SBML MML
sfr00040 Pentose and glucuronate interconversions SBML MML
sfr00051 Fructose and mannose metabolism SBML MML
sfr00052 Galactose metabolism SBML MML
sfr00053 Ascorbate and aldarate metabolism SBML MML
sfr00061 Fatty acid biosynthesis SBML MML
sfr00062 Fatty acid elongation in mitochondria SBML MML
sfr00071 Fatty acid metabolism SBML MML
sfr00072 Synthesis and degradation of ketone bodies SBML MML
sfr00100 (Undocumented) SBML MML
sfr00120 (Undocumented) SBML MML
sfr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sfr00220 (Undocumented) SBML MML
sfr00230 Purine metabolism SBML MML
sfr00240 Pyrimidine metabolism SBML MML
sfr00251 (Undocumented) SBML MML
sfr00252 (Undocumented) SBML MML
sfr00260 Glycine, serine and threonine metabolism SBML MML
sfr00271 (Undocumented) SBML MML
sfr00272 (Undocumented) SBML MML
sfr00280 Valine, leucine and isoleucine degradation SBML MML
sfr00281 Geraniol degradation SBML MML
sfr00290 Valine, leucine and isoleucine biosynthesis SBML MML
sfr00300 Lysine biosynthesis SBML MML
sfr00310 Lysine degradation SBML MML
sfr00330 Arginine and proline metabolism SBML MML
sfr00340 Histidine metabolism SBML MML
sfr00350 Tyrosine metabolism SBML MML
sfr00360 Phenylalanine metabolism SBML MML
sfr00361 gamma-Hexachlorocyclohexane degradation SBML MML
sfr00362 (Undocumented) SBML MML
sfr00380 Tryptophan metabolism SBML MML
sfr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sfr00401 Novobiocin biosynthesis SBML MML
sfr00410 beta-Alanine metabolism SBML MML
sfr00430 Taurine and hypotaurine metabolism SBML MML
sfr00450 Selenoamino acid metabolism SBML MML
sfr00460 (Undocumented) SBML MML
sfr00471 D-Glutamine and D-glutamate metabolism SBML MML
sfr00473 D-Alanine metabolism SBML MML
sfr00480 Glutathione metabolism SBML MML
sfr00500 Starch and sucrose metabolism SBML MML
sfr00520 Amino sugar and nucleotide sugar metabolism SBML MML
sfr00521 Streptomycin biosynthesis SBML MML
sfr00523 Polyketide sugar unit biosynthesis SBML MML
sfr00530 (Undocumented) SBML MML
sfr00540 Lipopolysaccharide biosynthesis SBML MML
sfr00550 Peptidoglycan biosynthesis SBML MML
sfr00561 Glycerolipid metabolism SBML MML
sfr00562 Inositol phosphate metabolism SBML MML
sfr00564 Glycerophospholipid metabolism SBML MML
sfr00590 Arachidonic acid metabolism SBML MML
sfr00592 alpha-Linolenic acid metabolism SBML MML
sfr00620 Pyruvate metabolism SBML MML
sfr00624 1- and 2-Methylnaphthalene degradation SBML MML
sfr00626 Naphthalene and anthracene degradation SBML MML
sfr00630 Glyoxylate and dicarboxylate metabolism SBML MML
sfr00631 1,2-Dichloroethane degradation SBML MML
sfr00632 (Undocumented) SBML MML
sfr00633 Trinitrotoluene degradation SBML MML
sfr00640 Propanoate metabolism SBML MML
sfr00641 3-Chloroacrylic acid degradation SBML MML
sfr00650 Butanoate metabolism SBML MML
sfr00660 C5-Branched dibasic acid metabolism SBML MML
sfr00670 One carbon pool by folate SBML MML
sfr00680 Methane metabolism SBML MML
sfr00710 (Undocumented) SBML MML
sfr00720 (Undocumented) SBML MML
sfr00730 Thiamine metabolism SBML MML
sfr00740 Riboflavin metabolism SBML MML
sfr00750 Vitamin B6 metabolism SBML MML
sfr00760 Nicotinate and nicotinamide metabolism SBML MML
sfr00770 Pantothenate and CoA biosynthesis SBML MML
sfr00780 Biotin metabolism SBML MML
sfr00785 Lipoic acid metabolism SBML MML
sfr00790 Folate biosynthesis SBML MML
sfr00860 Porphyrin and chlorophyll metabolism SBML MML
sfr00900 Terpenoid backbone biosynthesis SBML MML
sfr00903 (Undocumented) SBML MML
sfr00910 Nitrogen metabolism SBML MML
sfr00920 Sulfur metabolism SBML MML
sfr00930 Caprolactam degradation SBML MML
sfr00940 (Undocumented) SBML MML
sfr00970 Aminoacyl-tRNA biosynthesis SBML MML
sfr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sfr00982 (Undocumented) SBML MML
sfr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.