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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sfx: Shigella flexneri 2457T (serotype 2a)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sfx00010 Glycolysis / Gluconeogenesis SBML MML
sfx00020 Citrate cycle (TCA cycle) SBML MML
sfx00030 Pentose phosphate pathway SBML MML
sfx00040 Pentose and glucuronate interconversions SBML MML
sfx00051 Fructose and mannose metabolism SBML MML
sfx00052 Galactose metabolism SBML MML
sfx00053 Ascorbate and aldarate metabolism SBML MML
sfx00061 Fatty acid biosynthesis SBML MML
sfx00062 Fatty acid elongation in mitochondria SBML MML
sfx00071 Fatty acid metabolism SBML MML
sfx00100 (Undocumented) SBML MML
sfx00120 (Undocumented) SBML MML
sfx00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sfx00220 (Undocumented) SBML MML
sfx00230 Purine metabolism SBML MML
sfx00240 Pyrimidine metabolism SBML MML
sfx00251 (Undocumented) SBML MML
sfx00252 (Undocumented) SBML MML
sfx00260 Glycine, serine and threonine metabolism SBML MML
sfx00271 (Undocumented) SBML MML
sfx00272 (Undocumented) SBML MML
sfx00280 Valine, leucine and isoleucine degradation SBML MML
sfx00281 Geraniol degradation SBML MML
sfx00290 Valine, leucine and isoleucine biosynthesis SBML MML
sfx00300 Lysine biosynthesis SBML MML
sfx00310 Lysine degradation SBML MML
sfx00330 Arginine and proline metabolism SBML MML
sfx00340 Histidine metabolism SBML MML
sfx00350 Tyrosine metabolism SBML MML
sfx00360 Phenylalanine metabolism SBML MML
sfx00361 gamma-Hexachlorocyclohexane degradation SBML MML
sfx00362 (Undocumented) SBML MML
sfx00380 Tryptophan metabolism SBML MML
sfx00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sfx00401 Novobiocin biosynthesis SBML MML
sfx00410 beta-Alanine metabolism SBML MML
sfx00430 Taurine and hypotaurine metabolism SBML MML
sfx00450 Selenoamino acid metabolism SBML MML
sfx00460 (Undocumented) SBML MML
sfx00471 D-Glutamine and D-glutamate metabolism SBML MML
sfx00473 D-Alanine metabolism SBML MML
sfx00480 Glutathione metabolism SBML MML
sfx00500 Starch and sucrose metabolism SBML MML
sfx00520 Amino sugar and nucleotide sugar metabolism SBML MML
sfx00521 Streptomycin biosynthesis SBML MML
sfx00523 Polyketide sugar unit biosynthesis SBML MML
sfx00530 (Undocumented) SBML MML
sfx00540 Lipopolysaccharide biosynthesis SBML MML
sfx00550 Peptidoglycan biosynthesis SBML MML
sfx00561 Glycerolipid metabolism SBML MML
sfx00562 Inositol phosphate metabolism SBML MML
sfx00564 Glycerophospholipid metabolism SBML MML
sfx00590 Arachidonic acid metabolism SBML MML
sfx00592 alpha-Linolenic acid metabolism SBML MML
sfx00600 Sphingolipid metabolism SBML MML
sfx00620 Pyruvate metabolism SBML MML
sfx00624 1- and 2-Methylnaphthalene degradation SBML MML
sfx00630 Glyoxylate and dicarboxylate metabolism SBML MML
sfx00632 (Undocumented) SBML MML
sfx00633 Trinitrotoluene degradation SBML MML
sfx00640 Propanoate metabolism SBML MML
sfx00641 3-Chloroacrylic acid degradation SBML MML
sfx00650 Butanoate metabolism SBML MML
sfx00660 C5-Branched dibasic acid metabolism SBML MML
sfx00670 One carbon pool by folate SBML MML
sfx00680 Methane metabolism SBML MML
sfx00710 (Undocumented) SBML MML
sfx00720 (Undocumented) SBML MML
sfx00730 Thiamine metabolism SBML MML
sfx00740 Riboflavin metabolism SBML MML
sfx00750 Vitamin B6 metabolism SBML MML
sfx00760 Nicotinate and nicotinamide metabolism SBML MML
sfx00770 Pantothenate and CoA biosynthesis SBML MML
sfx00780 Biotin metabolism SBML MML
sfx00785 Lipoic acid metabolism SBML MML
sfx00790 Folate biosynthesis SBML MML
sfx00791 Atrazine degradation SBML MML
sfx00860 Porphyrin and chlorophyll metabolism SBML MML
sfx00900 Terpenoid backbone biosynthesis SBML MML
sfx00903 (Undocumented) SBML MML
sfx00910 Nitrogen metabolism SBML MML
sfx00920 Sulfur metabolism SBML MML
sfx00930 Caprolactam degradation SBML MML
sfx00950 (Undocumented) SBML MML
sfx00960 (Undocumented) SBML MML
sfx00970 Aminoacyl-tRNA biosynthesis SBML MML
sfx00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sfx00982 (Undocumented) SBML MML
sfx00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.