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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism shm: Shewanella sp. MR-7

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
shm00010 Glycolysis / Gluconeogenesis SBML MML
shm00020 Citrate cycle (TCA cycle) SBML MML
shm00030 Pentose phosphate pathway SBML MML
shm00031 (Undocumented) SBML MML
shm00040 Pentose and glucuronate interconversions SBML MML
shm00051 Fructose and mannose metabolism SBML MML
shm00052 Galactose metabolism SBML MML
shm00053 Ascorbate and aldarate metabolism SBML MML
shm00061 Fatty acid biosynthesis SBML MML
shm00062 Fatty acid elongation in mitochondria SBML MML
shm00071 Fatty acid metabolism SBML MML
shm00072 Synthesis and degradation of ketone bodies SBML MML
shm00100 (Undocumented) SBML MML
shm00120 (Undocumented) SBML MML
shm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
shm00150 Androgen and estrogen metabolism SBML MML
shm00220 (Undocumented) SBML MML
shm00230 Purine metabolism SBML MML
shm00240 Pyrimidine metabolism SBML MML
shm00251 (Undocumented) SBML MML
shm00252 (Undocumented) SBML MML
shm00260 Glycine, serine and threonine metabolism SBML MML
shm00271 (Undocumented) SBML MML
shm00272 (Undocumented) SBML MML
shm00280 Valine, leucine and isoleucine degradation SBML MML
shm00281 Geraniol degradation SBML MML
shm00290 Valine, leucine and isoleucine biosynthesis SBML MML
shm00300 Lysine biosynthesis SBML MML
shm00310 Lysine degradation SBML MML
shm00330 Arginine and proline metabolism SBML MML
shm00340 Histidine metabolism SBML MML
shm00350 Tyrosine metabolism SBML MML
shm00360 Phenylalanine metabolism SBML MML
shm00361 gamma-Hexachlorocyclohexane degradation SBML MML
shm00362 (Undocumented) SBML MML
shm00364 Fluorobenzoate degradation SBML MML
shm00380 Tryptophan metabolism SBML MML
shm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
shm00401 Novobiocin biosynthesis SBML MML
shm00410 beta-Alanine metabolism SBML MML
shm00430 Taurine and hypotaurine metabolism SBML MML
shm00450 Selenoamino acid metabolism SBML MML
shm00460 (Undocumented) SBML MML
shm00471 D-Glutamine and D-glutamate metabolism SBML MML
shm00473 D-Alanine metabolism SBML MML
shm00480 Glutathione metabolism SBML MML
shm00500 Starch and sucrose metabolism SBML MML
shm00520 Amino sugar and nucleotide sugar metabolism SBML MML
shm00521 Streptomycin biosynthesis SBML MML
shm00523 Polyketide sugar unit biosynthesis SBML MML
shm00530 (Undocumented) SBML MML
shm00540 Lipopolysaccharide biosynthesis SBML MML
shm00550 Peptidoglycan biosynthesis SBML MML
shm00561 Glycerolipid metabolism SBML MML
shm00562 Inositol phosphate metabolism SBML MML
shm00564 Glycerophospholipid metabolism SBML MML
shm00590 Arachidonic acid metabolism SBML MML
shm00592 alpha-Linolenic acid metabolism SBML MML
shm00620 Pyruvate metabolism SBML MML
shm00624 1- and 2-Methylnaphthalene degradation SBML MML
shm00627 1,4-Dichlorobenzene degradation SBML MML
shm00630 Glyoxylate and dicarboxylate metabolism SBML MML
shm00632 (Undocumented) SBML MML
shm00633 Trinitrotoluene degradation SBML MML
shm00640 Propanoate metabolism SBML MML
shm00641 3-Chloroacrylic acid degradation SBML MML
shm00643 Styrene degradation SBML MML
shm00650 Butanoate metabolism SBML MML
shm00660 C5-Branched dibasic acid metabolism SBML MML
shm00670 One carbon pool by folate SBML MML
shm00680 Methane metabolism SBML MML
shm00710 (Undocumented) SBML MML
shm00720 (Undocumented) SBML MML
shm00730 Thiamine metabolism SBML MML
shm00740 Riboflavin metabolism SBML MML
shm00750 Vitamin B6 metabolism SBML MML
shm00760 Nicotinate and nicotinamide metabolism SBML MML
shm00770 Pantothenate and CoA biosynthesis SBML MML
shm00780 Biotin metabolism SBML MML
shm00785 Lipoic acid metabolism SBML MML
shm00790 Folate biosynthesis SBML MML
shm00860 Porphyrin and chlorophyll metabolism SBML MML
shm00900 Terpenoid backbone biosynthesis SBML MML
shm00903 (Undocumented) SBML MML
shm00910 Nitrogen metabolism SBML MML
shm00920 Sulfur metabolism SBML MML
shm00930 Caprolactam degradation SBML MML
shm00970 Aminoacyl-tRNA biosynthesis SBML MML
shm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
shm00982 (Undocumented) SBML MML
shm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.