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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sit: Silicibacter sp. TM1040

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sit00010 Glycolysis / Gluconeogenesis SBML MML
sit00020 Citrate cycle (TCA cycle) SBML MML
sit00030 Pentose phosphate pathway SBML MML
sit00031 (Undocumented) SBML MML
sit00040 Pentose and glucuronate interconversions SBML MML
sit00051 Fructose and mannose metabolism SBML MML
sit00052 Galactose metabolism SBML MML
sit00053 Ascorbate and aldarate metabolism SBML MML
sit00061 Fatty acid biosynthesis SBML MML
sit00062 Fatty acid elongation in mitochondria SBML MML
sit00071 Fatty acid metabolism SBML MML
sit00072 Synthesis and degradation of ketone bodies SBML MML
sit00100 (Undocumented) SBML MML
sit00120 (Undocumented) SBML MML
sit00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sit00220 (Undocumented) SBML MML
sit00230 Purine metabolism SBML MML
sit00240 Pyrimidine metabolism SBML MML
sit00251 (Undocumented) SBML MML
sit00252 (Undocumented) SBML MML
sit00260 Glycine, serine and threonine metabolism SBML MML
sit00271 (Undocumented) SBML MML
sit00272 (Undocumented) SBML MML
sit00280 Valine, leucine and isoleucine degradation SBML MML
sit00281 Geraniol degradation SBML MML
sit00290 Valine, leucine and isoleucine biosynthesis SBML MML
sit00300 Lysine biosynthesis SBML MML
sit00310 Lysine degradation SBML MML
sit00311 Penicillin and cephalosporin biosynthesis SBML MML
sit00330 Arginine and proline metabolism SBML MML
sit00340 Histidine metabolism SBML MML
sit00350 Tyrosine metabolism SBML MML
sit00360 Phenylalanine metabolism SBML MML
sit00361 gamma-Hexachlorocyclohexane degradation SBML MML
sit00362 (Undocumented) SBML MML
sit00380 Tryptophan metabolism SBML MML
sit00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sit00401 Novobiocin biosynthesis SBML MML
sit00410 beta-Alanine metabolism SBML MML
sit00430 Taurine and hypotaurine metabolism SBML MML
sit00450 Selenoamino acid metabolism SBML MML
sit00460 (Undocumented) SBML MML
sit00471 D-Glutamine and D-glutamate metabolism SBML MML
sit00472 D-Arginine and D-ornithine metabolism SBML MML
sit00473 D-Alanine metabolism SBML MML
sit00480 Glutathione metabolism SBML MML
sit00500 Starch and sucrose metabolism SBML MML
sit00520 Amino sugar and nucleotide sugar metabolism SBML MML
sit00521 Streptomycin biosynthesis SBML MML
sit00523 Polyketide sugar unit biosynthesis SBML MML
sit00530 (Undocumented) SBML MML
sit00540 Lipopolysaccharide biosynthesis SBML MML
sit00550 Peptidoglycan biosynthesis SBML MML
sit00561 Glycerolipid metabolism SBML MML
sit00562 Inositol phosphate metabolism SBML MML
sit00564 Glycerophospholipid metabolism SBML MML
sit00592 alpha-Linolenic acid metabolism SBML MML
sit00600 Sphingolipid metabolism SBML MML
sit00620 Pyruvate metabolism SBML MML
sit00622 Toluene and xylene degradation SBML MML
sit00623 2,4-Dichlorobenzoate degradation SBML MML
sit00624 1- and 2-Methylnaphthalene degradation SBML MML
sit00626 Naphthalene and anthracene degradation SBML MML
sit00627 1,4-Dichlorobenzene degradation SBML MML
sit00628 Fluorene degradation SBML MML
sit00630 Glyoxylate and dicarboxylate metabolism SBML MML
sit00631 1,2-Dichloroethane degradation SBML MML
sit00632 (Undocumented) SBML MML
sit00640 Propanoate metabolism SBML MML
sit00641 3-Chloroacrylic acid degradation SBML MML
sit00642 Ethylbenzene degradation SBML MML
sit00643 Styrene degradation SBML MML
sit00650 Butanoate metabolism SBML MML
sit00660 C5-Branched dibasic acid metabolism SBML MML
sit00670 One carbon pool by folate SBML MML
sit00680 Methane metabolism SBML MML
sit00710 (Undocumented) SBML MML
sit00720 (Undocumented) SBML MML
sit00730 Thiamine metabolism SBML MML
sit00740 Riboflavin metabolism SBML MML
sit00750 Vitamin B6 metabolism SBML MML
sit00760 Nicotinate and nicotinamide metabolism SBML MML
sit00770 Pantothenate and CoA biosynthesis SBML MML
sit00780 Biotin metabolism SBML MML
sit00785 Lipoic acid metabolism SBML MML
sit00790 Folate biosynthesis SBML MML
sit00791 Atrazine degradation SBML MML
sit00860 Porphyrin and chlorophyll metabolism SBML MML
sit00900 Terpenoid backbone biosynthesis SBML MML
sit00903 (Undocumented) SBML MML
sit00910 Nitrogen metabolism SBML MML
sit00920 Sulfur metabolism SBML MML
sit00930 Caprolactam degradation SBML MML
sit00950 (Undocumented) SBML MML
sit00960 (Undocumented) SBML MML
sit00970 Aminoacyl-tRNA biosynthesis SBML MML
sit00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sit00982 (Undocumented) SBML MML
sit00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.