This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sma: Streptomyces avermitilis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sma00010 Glycolysis / Gluconeogenesis SBML MML
sma00020 Citrate cycle (TCA cycle) SBML MML
sma00030 Pentose phosphate pathway SBML MML
sma00031 (Undocumented) SBML MML
sma00040 Pentose and glucuronate interconversions SBML MML
sma00051 Fructose and mannose metabolism SBML MML
sma00052 Galactose metabolism SBML MML
sma00053 Ascorbate and aldarate metabolism SBML MML
sma00061 Fatty acid biosynthesis SBML MML
sma00062 Fatty acid elongation in mitochondria SBML MML
sma00071 Fatty acid metabolism SBML MML
sma00072 Synthesis and degradation of ketone bodies SBML MML
sma00100 (Undocumented) SBML MML
sma00120 (Undocumented) SBML MML
sma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sma00150 Androgen and estrogen metabolism SBML MML
sma00220 (Undocumented) SBML MML
sma00230 Purine metabolism SBML MML
sma00240 Pyrimidine metabolism SBML MML
sma00251 (Undocumented) SBML MML
sma00252 (Undocumented) SBML MML
sma00260 Glycine, serine and threonine metabolism SBML MML
sma00271 (Undocumented) SBML MML
sma00272 (Undocumented) SBML MML
sma00280 Valine, leucine and isoleucine degradation SBML MML
sma00281 Geraniol degradation SBML MML
sma00290 Valine, leucine and isoleucine biosynthesis SBML MML
sma00300 Lysine biosynthesis SBML MML
sma00310 Lysine degradation SBML MML
sma00311 Penicillin and cephalosporin biosynthesis SBML MML
sma00330 Arginine and proline metabolism SBML MML
sma00340 Histidine metabolism SBML MML
sma00350 Tyrosine metabolism SBML MML
sma00360 Phenylalanine metabolism SBML MML
sma00361 gamma-Hexachlorocyclohexane degradation SBML MML
sma00362 (Undocumented) SBML MML
sma00363 Bisphenol A degradation SBML MML
sma00364 Fluorobenzoate degradation SBML MML
sma00380 Tryptophan metabolism SBML MML
sma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sma00401 Novobiocin biosynthesis SBML MML
sma00410 beta-Alanine metabolism SBML MML
sma00430 Taurine and hypotaurine metabolism SBML MML
sma00450 Selenoamino acid metabolism SBML MML
sma00460 (Undocumented) SBML MML
sma00471 D-Glutamine and D-glutamate metabolism SBML MML
sma00473 D-Alanine metabolism SBML MML
sma00480 Glutathione metabolism SBML MML
sma00500 Starch and sucrose metabolism SBML MML
sma00510 (Undocumented) SBML MML
sma00520 Amino sugar and nucleotide sugar metabolism SBML MML
sma00521 Streptomycin biosynthesis SBML MML
sma00523 Polyketide sugar unit biosynthesis SBML MML
sma00530 (Undocumented) SBML MML
sma00550 Peptidoglycan biosynthesis SBML MML
sma00561 Glycerolipid metabolism SBML MML
sma00562 Inositol phosphate metabolism SBML MML
sma00564 Glycerophospholipid metabolism SBML MML
sma00565 Ether lipid metabolism SBML MML
sma00590 Arachidonic acid metabolism SBML MML
sma00592 alpha-Linolenic acid metabolism SBML MML
sma00600 Sphingolipid metabolism SBML MML
sma00620 Pyruvate metabolism SBML MML
sma00622 Toluene and xylene degradation SBML MML
sma00623 2,4-Dichlorobenzoate degradation SBML MML
sma00624 1- and 2-Methylnaphthalene degradation SBML MML
sma00626 Naphthalene and anthracene degradation SBML MML
sma00627 1,4-Dichlorobenzene degradation SBML MML
sma00630 Glyoxylate and dicarboxylate metabolism SBML MML
sma00631 1,2-Dichloroethane degradation SBML MML
sma00632 (Undocumented) SBML MML
sma00640 Propanoate metabolism SBML MML
sma00641 3-Chloroacrylic acid degradation SBML MML
sma00642 Ethylbenzene degradation SBML MML
sma00643 Styrene degradation SBML MML
sma00650 Butanoate metabolism SBML MML
sma00660 C5-Branched dibasic acid metabolism SBML MML
sma00670 One carbon pool by folate SBML MML
sma00680 Methane metabolism SBML MML
sma00710 (Undocumented) SBML MML
sma00720 (Undocumented) SBML MML
sma00730 Thiamine metabolism SBML MML
sma00740 Riboflavin metabolism SBML MML
sma00750 Vitamin B6 metabolism SBML MML
sma00760 Nicotinate and nicotinamide metabolism SBML MML
sma00770 Pantothenate and CoA biosynthesis SBML MML
sma00780 Biotin metabolism SBML MML
sma00785 Lipoic acid metabolism SBML MML
sma00790 Folate biosynthesis SBML MML
sma00791 Atrazine degradation SBML MML
sma00860 Porphyrin and chlorophyll metabolism SBML MML
sma00900 Terpenoid backbone biosynthesis SBML MML
sma00903 (Undocumented) SBML MML
sma00906 Carotenoid biosynthesis SBML MML
sma00910 Nitrogen metabolism SBML MML
sma00920 Sulfur metabolism SBML MML
sma00930 Caprolactam degradation SBML MML
sma00940 (Undocumented) SBML MML
sma00941 (Undocumented) SBML MML
sma00950 (Undocumented) SBML MML
sma00960 (Undocumented) SBML MML
sma00970 Aminoacyl-tRNA biosynthesis SBML MML
sma00982 (Undocumented) SBML MML
sma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.