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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism smd: Sinorhizobium medicae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
smd00010 Glycolysis / Gluconeogenesis SBML MML
smd00020 Citrate cycle (TCA cycle) SBML MML
smd00030 Pentose phosphate pathway SBML MML
smd00031 (Undocumented) SBML MML
smd00040 Pentose and glucuronate interconversions SBML MML
smd00051 Fructose and mannose metabolism SBML MML
smd00052 Galactose metabolism SBML MML
smd00053 Ascorbate and aldarate metabolism SBML MML
smd00061 Fatty acid biosynthesis SBML MML
smd00062 Fatty acid elongation in mitochondria SBML MML
smd00071 Fatty acid metabolism SBML MML
smd00072 Synthesis and degradation of ketone bodies SBML MML
smd00100 (Undocumented) SBML MML
smd00120 (Undocumented) SBML MML
smd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
smd00150 Androgen and estrogen metabolism SBML MML
smd00220 (Undocumented) SBML MML
smd00230 Purine metabolism SBML MML
smd00240 Pyrimidine metabolism SBML MML
smd00251 (Undocumented) SBML MML
smd00252 (Undocumented) SBML MML
smd00260 Glycine, serine and threonine metabolism SBML MML
smd00271 (Undocumented) SBML MML
smd00272 (Undocumented) SBML MML
smd00280 Valine, leucine and isoleucine degradation SBML MML
smd00281 Geraniol degradation SBML MML
smd00290 Valine, leucine and isoleucine biosynthesis SBML MML
smd00300 Lysine biosynthesis SBML MML
smd00310 Lysine degradation SBML MML
smd00330 Arginine and proline metabolism SBML MML
smd00340 Histidine metabolism SBML MML
smd00350 Tyrosine metabolism SBML MML
smd00360 Phenylalanine metabolism SBML MML
smd00361 gamma-Hexachlorocyclohexane degradation SBML MML
smd00362 (Undocumented) SBML MML
smd00363 Bisphenol A degradation SBML MML
smd00364 Fluorobenzoate degradation SBML MML
smd00380 Tryptophan metabolism SBML MML
smd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
smd00401 Novobiocin biosynthesis SBML MML
smd00410 beta-Alanine metabolism SBML MML
smd00430 Taurine and hypotaurine metabolism SBML MML
smd00440 Phosphonate and phosphinate metabolism SBML MML
smd00450 Selenoamino acid metabolism SBML MML
smd00460 (Undocumented) SBML MML
smd00471 D-Glutamine and D-glutamate metabolism SBML MML
smd00472 D-Arginine and D-ornithine metabolism SBML MML
smd00473 D-Alanine metabolism SBML MML
smd00480 Glutathione metabolism SBML MML
smd00500 Starch and sucrose metabolism SBML MML
smd00520 Amino sugar and nucleotide sugar metabolism SBML MML
smd00521 Streptomycin biosynthesis SBML MML
smd00523 Polyketide sugar unit biosynthesis SBML MML
smd00530 (Undocumented) SBML MML
smd00540 Lipopolysaccharide biosynthesis SBML MML
smd00550 Peptidoglycan biosynthesis SBML MML
smd00561 Glycerolipid metabolism SBML MML
smd00562 Inositol phosphate metabolism SBML MML
smd00564 Glycerophospholipid metabolism SBML MML
smd00592 alpha-Linolenic acid metabolism SBML MML
smd00600 Sphingolipid metabolism SBML MML
smd00620 Pyruvate metabolism SBML MML
smd00622 Toluene and xylene degradation SBML MML
smd00623 2,4-Dichlorobenzoate degradation SBML MML
smd00624 1- and 2-Methylnaphthalene degradation SBML MML
smd00625 (Undocumented) SBML MML
smd00626 Naphthalene and anthracene degradation SBML MML
smd00627 1,4-Dichlorobenzene degradation SBML MML
smd00628 Fluorene degradation SBML MML
smd00630 Glyoxylate and dicarboxylate metabolism SBML MML
smd00631 1,2-Dichloroethane degradation SBML MML
smd00632 (Undocumented) SBML MML
smd00640 Propanoate metabolism SBML MML
smd00641 3-Chloroacrylic acid degradation SBML MML
smd00642 Ethylbenzene degradation SBML MML
smd00643 Styrene degradation SBML MML
smd00650 Butanoate metabolism SBML MML
smd00660 C5-Branched dibasic acid metabolism SBML MML
smd00670 One carbon pool by folate SBML MML
smd00680 Methane metabolism SBML MML
smd00710 (Undocumented) SBML MML
smd00720 (Undocumented) SBML MML
smd00730 Thiamine metabolism SBML MML
smd00740 Riboflavin metabolism SBML MML
smd00750 Vitamin B6 metabolism SBML MML
smd00760 Nicotinate and nicotinamide metabolism SBML MML
smd00770 Pantothenate and CoA biosynthesis SBML MML
smd00780 Biotin metabolism SBML MML
smd00785 Lipoic acid metabolism SBML MML
smd00790 Folate biosynthesis SBML MML
smd00860 Porphyrin and chlorophyll metabolism SBML MML
smd00900 Terpenoid backbone biosynthesis SBML MML
smd00903 (Undocumented) SBML MML
smd00910 Nitrogen metabolism SBML MML
smd00920 Sulfur metabolism SBML MML
smd00930 Caprolactam degradation SBML MML
smd00940 (Undocumented) SBML MML
smd00950 (Undocumented) SBML MML
smd00960 (Undocumented) SBML MML
smd00970 Aminoacyl-tRNA biosynthesis SBML MML
smd00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
smd00982 (Undocumented) SBML MML
smd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.