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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism smr: Staphylothermus marinus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
smr00010 Glycolysis / Gluconeogenesis SBML MML
smr00020 Citrate cycle (TCA cycle) SBML MML
smr00030 Pentose phosphate pathway SBML MML
smr00051 Fructose and mannose metabolism SBML MML
smr00052 Galactose metabolism SBML MML
smr00061 Fatty acid biosynthesis SBML MML
smr00071 Fatty acid metabolism SBML MML
smr00100 (Undocumented) SBML MML
smr00120 (Undocumented) SBML MML
smr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
smr00220 (Undocumented) SBML MML
smr00230 Purine metabolism SBML MML
smr00240 Pyrimidine metabolism SBML MML
smr00251 (Undocumented) SBML MML
smr00252 (Undocumented) SBML MML
smr00260 Glycine, serine and threonine metabolism SBML MML
smr00271 (Undocumented) SBML MML
smr00272 (Undocumented) SBML MML
smr00280 Valine, leucine and isoleucine degradation SBML MML
smr00281 Geraniol degradation SBML MML
smr00290 Valine, leucine and isoleucine biosynthesis SBML MML
smr00300 Lysine biosynthesis SBML MML
smr00330 Arginine and proline metabolism SBML MML
smr00350 Tyrosine metabolism SBML MML
smr00360 Phenylalanine metabolism SBML MML
smr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
smr00410 beta-Alanine metabolism SBML MML
smr00450 Selenoamino acid metabolism SBML MML
smr00460 (Undocumented) SBML MML
smr00480 Glutathione metabolism SBML MML
smr00500 Starch and sucrose metabolism SBML MML
smr00510 (Undocumented) SBML MML
smr00520 Amino sugar and nucleotide sugar metabolism SBML MML
smr00521 Streptomycin biosynthesis SBML MML
smr00530 (Undocumented) SBML MML
smr00550 Peptidoglycan biosynthesis SBML MML
smr00562 Inositol phosphate metabolism SBML MML
smr00564 Glycerophospholipid metabolism SBML MML
smr00592 alpha-Linolenic acid metabolism SBML MML
smr00620 Pyruvate metabolism SBML MML
smr00624 1- and 2-Methylnaphthalene degradation SBML MML
smr00630 Glyoxylate and dicarboxylate metabolism SBML MML
smr00640 Propanoate metabolism SBML MML
smr00641 3-Chloroacrylic acid degradation SBML MML
smr00650 Butanoate metabolism SBML MML
smr00670 One carbon pool by folate SBML MML
smr00680 Methane metabolism SBML MML
smr00710 (Undocumented) SBML MML
smr00720 (Undocumented) SBML MML
smr00730 Thiamine metabolism SBML MML
smr00740 Riboflavin metabolism SBML MML
smr00750 Vitamin B6 metabolism SBML MML
smr00760 Nicotinate and nicotinamide metabolism SBML MML
smr00770 Pantothenate and CoA biosynthesis SBML MML
smr00780 Biotin metabolism SBML MML
smr00785 Lipoic acid metabolism SBML MML
smr00860 Porphyrin and chlorophyll metabolism SBML MML
smr00900 Terpenoid backbone biosynthesis SBML MML
smr00910 Nitrogen metabolism SBML MML
smr00920 Sulfur metabolism SBML MML
smr00940 (Undocumented) SBML MML
smr00950 (Undocumented) SBML MML
smr00970 Aminoacyl-tRNA biosynthesis SBML MML
smr00982 (Undocumented) SBML MML
smr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.