This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism son: Shewanella oneidensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
son00010 Glycolysis / Gluconeogenesis SBML MML
son00020 Citrate cycle (TCA cycle) SBML MML
son00030 Pentose phosphate pathway SBML MML
son00031 (Undocumented) SBML MML
son00040 Pentose and glucuronate interconversions SBML MML
son00051 Fructose and mannose metabolism SBML MML
son00052 Galactose metabolism SBML MML
son00053 Ascorbate and aldarate metabolism SBML MML
son00061 Fatty acid biosynthesis SBML MML
son00062 Fatty acid elongation in mitochondria SBML MML
son00071 Fatty acid metabolism SBML MML
son00072 Synthesis and degradation of ketone bodies SBML MML
son00100 (Undocumented) SBML MML
son00120 (Undocumented) SBML MML
son00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
son00220 (Undocumented) SBML MML
son00230 Purine metabolism SBML MML
son00240 Pyrimidine metabolism SBML MML
son00251 (Undocumented) SBML MML
son00252 (Undocumented) SBML MML
son00260 Glycine, serine and threonine metabolism SBML MML
son00271 (Undocumented) SBML MML
son00272 (Undocumented) SBML MML
son00280 Valine, leucine and isoleucine degradation SBML MML
son00281 Geraniol degradation SBML MML
son00290 Valine, leucine and isoleucine biosynthesis SBML MML
son00300 Lysine biosynthesis SBML MML
son00310 Lysine degradation SBML MML
son00311 Penicillin and cephalosporin biosynthesis SBML MML
son00330 Arginine and proline metabolism SBML MML
son00340 Histidine metabolism SBML MML
son00350 Tyrosine metabolism SBML MML
son00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
son00360 Phenylalanine metabolism SBML MML
son00361 gamma-Hexachlorocyclohexane degradation SBML MML
son00362 (Undocumented) SBML MML
son00364 Fluorobenzoate degradation SBML MML
son00380 Tryptophan metabolism SBML MML
son00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
son00401 Novobiocin biosynthesis SBML MML
son00410 beta-Alanine metabolism SBML MML
son00430 Taurine and hypotaurine metabolism SBML MML
son00450 Selenoamino acid metabolism SBML MML
son00460 (Undocumented) SBML MML
son00471 D-Glutamine and D-glutamate metabolism SBML MML
son00473 D-Alanine metabolism SBML MML
son00480 Glutathione metabolism SBML MML
son00500 Starch and sucrose metabolism SBML MML
son00520 Amino sugar and nucleotide sugar metabolism SBML MML
son00521 Streptomycin biosynthesis SBML MML
son00523 Polyketide sugar unit biosynthesis SBML MML
son00530 (Undocumented) SBML MML
son00540 Lipopolysaccharide biosynthesis SBML MML
son00550 Peptidoglycan biosynthesis SBML MML
son00561 Glycerolipid metabolism SBML MML
son00562 Inositol phosphate metabolism SBML MML
son00564 Glycerophospholipid metabolism SBML MML
son00590 Arachidonic acid metabolism SBML MML
son00592 alpha-Linolenic acid metabolism SBML MML
son00620 Pyruvate metabolism SBML MML
son00624 1- and 2-Methylnaphthalene degradation SBML MML
son00626 Naphthalene and anthracene degradation SBML MML
son00627 1,4-Dichlorobenzene degradation SBML MML
son00628 Fluorene degradation SBML MML
son00630 Glyoxylate and dicarboxylate metabolism SBML MML
son00631 1,2-Dichloroethane degradation SBML MML
son00632 (Undocumented) SBML MML
son00633 Trinitrotoluene degradation SBML MML
son00640 Propanoate metabolism SBML MML
son00641 3-Chloroacrylic acid degradation SBML MML
son00643 Styrene degradation SBML MML
son00650 Butanoate metabolism SBML MML
son00660 C5-Branched dibasic acid metabolism SBML MML
son00670 One carbon pool by folate SBML MML
son00680 Methane metabolism SBML MML
son00710 (Undocumented) SBML MML
son00720 (Undocumented) SBML MML
son00730 Thiamine metabolism SBML MML
son00740 Riboflavin metabolism SBML MML
son00750 Vitamin B6 metabolism SBML MML
son00760 Nicotinate and nicotinamide metabolism SBML MML
son00770 Pantothenate and CoA biosynthesis SBML MML
son00780 Biotin metabolism SBML MML
son00785 Lipoic acid metabolism SBML MML
son00790 Folate biosynthesis SBML MML
son00860 Porphyrin and chlorophyll metabolism SBML MML
son00900 Terpenoid backbone biosynthesis SBML MML
son00903 (Undocumented) SBML MML
son00910 Nitrogen metabolism SBML MML
son00920 Sulfur metabolism SBML MML
son00930 Caprolactam degradation SBML MML
son00940 (Undocumented) SBML MML
son00950 (Undocumented) SBML MML
son00970 Aminoacyl-tRNA biosynthesis SBML MML
son00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
son00982 (Undocumented) SBML MML
son00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.