This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism spd: Streptococcus pneumoniae D39

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
spd00010 Glycolysis / Gluconeogenesis SBML MML
spd00030 Pentose phosphate pathway SBML MML
spd00040 Pentose and glucuronate interconversions SBML MML
spd00051 Fructose and mannose metabolism SBML MML
spd00052 Galactose metabolism SBML MML
spd00053 Ascorbate and aldarate metabolism SBML MML
spd00061 Fatty acid biosynthesis SBML MML
spd00071 Fatty acid metabolism SBML MML
spd00100 (Undocumented) SBML MML
spd00120 (Undocumented) SBML MML
spd00220 (Undocumented) SBML MML
spd00230 Purine metabolism SBML MML
spd00240 Pyrimidine metabolism SBML MML
spd00251 (Undocumented) SBML MML
spd00252 (Undocumented) SBML MML
spd00260 Glycine, serine and threonine metabolism SBML MML
spd00271 (Undocumented) SBML MML
spd00272 (Undocumented) SBML MML
spd00280 Valine, leucine and isoleucine degradation SBML MML
spd00290 Valine, leucine and isoleucine biosynthesis SBML MML
spd00300 Lysine biosynthesis SBML MML
spd00310 Lysine degradation SBML MML
spd00330 Arginine and proline metabolism SBML MML
spd00340 Histidine metabolism SBML MML
spd00350 Tyrosine metabolism SBML MML
spd00360 Phenylalanine metabolism SBML MML
spd00362 (Undocumented) SBML MML
spd00380 Tryptophan metabolism SBML MML
spd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
spd00410 beta-Alanine metabolism SBML MML
spd00430 Taurine and hypotaurine metabolism SBML MML
spd00440 Phosphonate and phosphinate metabolism SBML MML
spd00450 Selenoamino acid metabolism SBML MML
spd00460 (Undocumented) SBML MML
spd00471 D-Glutamine and D-glutamate metabolism SBML MML
spd00473 D-Alanine metabolism SBML MML
spd00480 Glutathione metabolism SBML MML
spd00500 Starch and sucrose metabolism SBML MML
spd00520 Amino sugar and nucleotide sugar metabolism SBML MML
spd00521 Streptomycin biosynthesis SBML MML
spd00523 Polyketide sugar unit biosynthesis SBML MML
spd00530 (Undocumented) SBML MML
spd00550 Peptidoglycan biosynthesis SBML MML
spd00561 Glycerolipid metabolism SBML MML
spd00562 Inositol phosphate metabolism SBML MML
spd00564 Glycerophospholipid metabolism SBML MML
spd00590 Arachidonic acid metabolism SBML MML
spd00600 Sphingolipid metabolism SBML MML
spd00620 Pyruvate metabolism SBML MML
spd00624 1- and 2-Methylnaphthalene degradation SBML MML
spd00628 Fluorene degradation SBML MML
spd00630 Glyoxylate and dicarboxylate metabolism SBML MML
spd00632 (Undocumented) SBML MML
spd00640 Propanoate metabolism SBML MML
spd00641 3-Chloroacrylic acid degradation SBML MML
spd00650 Butanoate metabolism SBML MML
spd00660 C5-Branched dibasic acid metabolism SBML MML
spd00670 One carbon pool by folate SBML MML
spd00680 Methane metabolism SBML MML
spd00710 (Undocumented) SBML MML
spd00730 Thiamine metabolism SBML MML
spd00740 Riboflavin metabolism SBML MML
spd00750 Vitamin B6 metabolism SBML MML
spd00760 Nicotinate and nicotinamide metabolism SBML MML
spd00770 Pantothenate and CoA biosynthesis SBML MML
spd00780 Biotin metabolism SBML MML
spd00785 Lipoic acid metabolism SBML MML
spd00790 Folate biosynthesis SBML MML
spd00860 Porphyrin and chlorophyll metabolism SBML MML
spd00900 Terpenoid backbone biosynthesis SBML MML
spd00903 (Undocumented) SBML MML
spd00910 Nitrogen metabolism SBML MML
spd00920 Sulfur metabolism SBML MML
spd00930 Caprolactam degradation SBML MML
spd00940 (Undocumented) SBML MML
spd00950 (Undocumented) SBML MML
spd00960 (Undocumented) SBML MML
spd00970 Aminoacyl-tRNA biosynthesis SBML MML
spd00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
spd00982 (Undocumented) SBML MML
spd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.