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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism spe: Serratia proteamaculans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
spe00010 Glycolysis / Gluconeogenesis SBML MML
spe00020 Citrate cycle (TCA cycle) SBML MML
spe00030 Pentose phosphate pathway SBML MML
spe00031 (Undocumented) SBML MML
spe00040 Pentose and glucuronate interconversions SBML MML
spe00051 Fructose and mannose metabolism SBML MML
spe00052 Galactose metabolism SBML MML
spe00053 Ascorbate and aldarate metabolism SBML MML
spe00061 Fatty acid biosynthesis SBML MML
spe00062 Fatty acid elongation in mitochondria SBML MML
spe00071 Fatty acid metabolism SBML MML
spe00072 Synthesis and degradation of ketone bodies SBML MML
spe00100 (Undocumented) SBML MML
spe00120 (Undocumented) SBML MML
spe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
spe00220 (Undocumented) SBML MML
spe00230 Purine metabolism SBML MML
spe00240 Pyrimidine metabolism SBML MML
spe00251 (Undocumented) SBML MML
spe00252 (Undocumented) SBML MML
spe00260 Glycine, serine and threonine metabolism SBML MML
spe00271 (Undocumented) SBML MML
spe00272 (Undocumented) SBML MML
spe00280 Valine, leucine and isoleucine degradation SBML MML
spe00281 Geraniol degradation SBML MML
spe00290 Valine, leucine and isoleucine biosynthesis SBML MML
spe00300 Lysine biosynthesis SBML MML
spe00310 Lysine degradation SBML MML
spe00311 Penicillin and cephalosporin biosynthesis SBML MML
spe00330 Arginine and proline metabolism SBML MML
spe00340 Histidine metabolism SBML MML
spe00350 Tyrosine metabolism SBML MML
spe00360 Phenylalanine metabolism SBML MML
spe00361 gamma-Hexachlorocyclohexane degradation SBML MML
spe00362 (Undocumented) SBML MML
spe00364 Fluorobenzoate degradation SBML MML
spe00380 Tryptophan metabolism SBML MML
spe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
spe00401 Novobiocin biosynthesis SBML MML
spe00410 beta-Alanine metabolism SBML MML
spe00430 Taurine and hypotaurine metabolism SBML MML
spe00450 Selenoamino acid metabolism SBML MML
spe00460 (Undocumented) SBML MML
spe00471 D-Glutamine and D-glutamate metabolism SBML MML
spe00473 D-Alanine metabolism SBML MML
spe00480 Glutathione metabolism SBML MML
spe00500 Starch and sucrose metabolism SBML MML
spe00520 Amino sugar and nucleotide sugar metabolism SBML MML
spe00521 Streptomycin biosynthesis SBML MML
spe00523 Polyketide sugar unit biosynthesis SBML MML
spe00530 (Undocumented) SBML MML
spe00540 Lipopolysaccharide biosynthesis SBML MML
spe00550 Peptidoglycan biosynthesis SBML MML
spe00561 Glycerolipid metabolism SBML MML
spe00562 Inositol phosphate metabolism SBML MML
spe00564 Glycerophospholipid metabolism SBML MML
spe00565 Ether lipid metabolism SBML MML
spe00590 Arachidonic acid metabolism SBML MML
spe00592 alpha-Linolenic acid metabolism SBML MML
spe00600 Sphingolipid metabolism SBML MML
spe00620 Pyruvate metabolism SBML MML
spe00621 (Undocumented) SBML MML
spe00622 Toluene and xylene degradation SBML MML
spe00623 2,4-Dichlorobenzoate degradation SBML MML
spe00624 1- and 2-Methylnaphthalene degradation SBML MML
spe00626 Naphthalene and anthracene degradation SBML MML
spe00627 1,4-Dichlorobenzene degradation SBML MML
spe00628 Fluorene degradation SBML MML
spe00630 Glyoxylate and dicarboxylate metabolism SBML MML
spe00632 (Undocumented) SBML MML
spe00633 Trinitrotoluene degradation SBML MML
spe00640 Propanoate metabolism SBML MML
spe00641 3-Chloroacrylic acid degradation SBML MML
spe00642 Ethylbenzene degradation SBML MML
spe00643 Styrene degradation SBML MML
spe00650 Butanoate metabolism SBML MML
spe00660 C5-Branched dibasic acid metabolism SBML MML
spe00670 One carbon pool by folate SBML MML
spe00680 Methane metabolism SBML MML
spe00710 (Undocumented) SBML MML
spe00720 (Undocumented) SBML MML
spe00730 Thiamine metabolism SBML MML
spe00740 Riboflavin metabolism SBML MML
spe00750 Vitamin B6 metabolism SBML MML
spe00760 Nicotinate and nicotinamide metabolism SBML MML
spe00770 Pantothenate and CoA biosynthesis SBML MML
spe00780 Biotin metabolism SBML MML
spe00785 Lipoic acid metabolism SBML MML
spe00790 Folate biosynthesis SBML MML
spe00791 Atrazine degradation SBML MML
spe00860 Porphyrin and chlorophyll metabolism SBML MML
spe00900 Terpenoid backbone biosynthesis SBML MML
spe00903 (Undocumented) SBML MML
spe00910 Nitrogen metabolism SBML MML
spe00920 Sulfur metabolism SBML MML
spe00930 Caprolactam degradation SBML MML
spe00940 (Undocumented) SBML MML
spe00950 (Undocumented) SBML MML
spe00960 (Undocumented) SBML MML
spe00970 Aminoacyl-tRNA biosynthesis SBML MML
spe00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
spe00982 (Undocumented) SBML MML
spe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.