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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism spn: Streptococcus pneumoniae TIGR4

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
spn00010 Glycolysis / Gluconeogenesis SBML MML
spn00030 Pentose phosphate pathway SBML MML
spn00040 Pentose and glucuronate interconversions SBML MML
spn00051 Fructose and mannose metabolism SBML MML
spn00052 Galactose metabolism SBML MML
spn00053 Ascorbate and aldarate metabolism SBML MML
spn00061 Fatty acid biosynthesis SBML MML
spn00071 Fatty acid metabolism SBML MML
spn00100 (Undocumented) SBML MML
spn00220 (Undocumented) SBML MML
spn00230 Purine metabolism SBML MML
spn00240 Pyrimidine metabolism SBML MML
spn00251 (Undocumented) SBML MML
spn00252 (Undocumented) SBML MML
spn00260 Glycine, serine and threonine metabolism SBML MML
spn00271 (Undocumented) SBML MML
spn00272 (Undocumented) SBML MML
spn00280 Valine, leucine and isoleucine degradation SBML MML
spn00290 Valine, leucine and isoleucine biosynthesis SBML MML
spn00300 Lysine biosynthesis SBML MML
spn00310 Lysine degradation SBML MML
spn00330 Arginine and proline metabolism SBML MML
spn00340 Histidine metabolism SBML MML
spn00350 Tyrosine metabolism SBML MML
spn00360 Phenylalanine metabolism SBML MML
spn00362 (Undocumented) SBML MML
spn00380 Tryptophan metabolism SBML MML
spn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
spn00410 beta-Alanine metabolism SBML MML
spn00430 Taurine and hypotaurine metabolism SBML MML
spn00450 Selenoamino acid metabolism SBML MML
spn00460 (Undocumented) SBML MML
spn00471 D-Glutamine and D-glutamate metabolism SBML MML
spn00473 D-Alanine metabolism SBML MML
spn00480 Glutathione metabolism SBML MML
spn00500 Starch and sucrose metabolism SBML MML
spn00520 Amino sugar and nucleotide sugar metabolism SBML MML
spn00521 Streptomycin biosynthesis SBML MML
spn00530 (Undocumented) SBML MML
spn00550 Peptidoglycan biosynthesis SBML MML
spn00561 Glycerolipid metabolism SBML MML
spn00562 Inositol phosphate metabolism SBML MML
spn00564 Glycerophospholipid metabolism SBML MML
spn00590 Arachidonic acid metabolism SBML MML
spn00600 Sphingolipid metabolism SBML MML
spn00620 Pyruvate metabolism SBML MML
spn00624 1- and 2-Methylnaphthalene degradation SBML MML
spn00628 Fluorene degradation SBML MML
spn00630 Glyoxylate and dicarboxylate metabolism SBML MML
spn00632 (Undocumented) SBML MML
spn00640 Propanoate metabolism SBML MML
spn00641 3-Chloroacrylic acid degradation SBML MML
spn00650 Butanoate metabolism SBML MML
spn00660 C5-Branched dibasic acid metabolism SBML MML
spn00670 One carbon pool by folate SBML MML
spn00680 Methane metabolism SBML MML
spn00710 (Undocumented) SBML MML
spn00730 Thiamine metabolism SBML MML
spn00740 Riboflavin metabolism SBML MML
spn00750 Vitamin B6 metabolism SBML MML
spn00760 Nicotinate and nicotinamide metabolism SBML MML
spn00770 Pantothenate and CoA biosynthesis SBML MML
spn00780 Biotin metabolism SBML MML
spn00785 Lipoic acid metabolism SBML MML
spn00790 Folate biosynthesis SBML MML
spn00860 Porphyrin and chlorophyll metabolism SBML MML
spn00900 Terpenoid backbone biosynthesis SBML MML
spn00903 (Undocumented) SBML MML
spn00910 Nitrogen metabolism SBML MML
spn00920 Sulfur metabolism SBML MML
spn00930 Caprolactam degradation SBML MML
spn00940 (Undocumented) SBML MML
spn00950 (Undocumented) SBML MML
spn00960 (Undocumented) SBML MML
spn00970 Aminoacyl-tRNA biosynthesis SBML MML
spn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
spn00982 (Undocumented) SBML MML
spn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.