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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism spu: Strongylocentrotus purpuratus (purple sea urchin)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
spu00010 Glycolysis / Gluconeogenesis SBML MML
spu00020 Citrate cycle (TCA cycle) SBML MML
spu00030 Pentose phosphate pathway SBML MML
spu00031 (Undocumented) SBML MML
spu00040 Pentose and glucuronate interconversions SBML MML
spu00051 Fructose and mannose metabolism SBML MML
spu00052 Galactose metabolism SBML MML
spu00053 Ascorbate and aldarate metabolism SBML MML
spu00061 Fatty acid biosynthesis SBML MML
spu00062 Fatty acid elongation in mitochondria SBML MML
spu00071 Fatty acid metabolism SBML MML
spu00072 Synthesis and degradation of ketone bodies SBML MML
spu00100 (Undocumented) SBML MML
spu00120 (Undocumented) SBML MML
spu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
spu00140 (Undocumented) SBML MML
spu00150 Androgen and estrogen metabolism SBML MML
spu00220 (Undocumented) SBML MML
spu00230 Purine metabolism SBML MML
spu00232 Caffeine metabolism SBML MML
spu00240 Pyrimidine metabolism SBML MML
spu00251 (Undocumented) SBML MML
spu00252 (Undocumented) SBML MML
spu00260 Glycine, serine and threonine metabolism SBML MML
spu00271 (Undocumented) SBML MML
spu00272 (Undocumented) SBML MML
spu00280 Valine, leucine and isoleucine degradation SBML MML
spu00290 Valine, leucine and isoleucine biosynthesis SBML MML
spu00310 Lysine degradation SBML MML
spu00330 Arginine and proline metabolism SBML MML
spu00340 Histidine metabolism SBML MML
spu00350 Tyrosine metabolism SBML MML
spu00360 Phenylalanine metabolism SBML MML
spu00361 gamma-Hexachlorocyclohexane degradation SBML MML
spu00363 Bisphenol A degradation SBML MML
spu00380 Tryptophan metabolism SBML MML
spu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
spu00401 Novobiocin biosynthesis SBML MML
spu00410 beta-Alanine metabolism SBML MML
spu00430 Taurine and hypotaurine metabolism SBML MML
spu00440 Phosphonate and phosphinate metabolism SBML MML
spu00450 Selenoamino acid metabolism SBML MML
spu00460 (Undocumented) SBML MML
spu00471 D-Glutamine and D-glutamate metabolism SBML MML
spu00480 Glutathione metabolism SBML MML
spu00500 Starch and sucrose metabolism SBML MML
spu00510 (Undocumented) SBML MML
spu00520 Amino sugar and nucleotide sugar metabolism SBML MML
spu00521 Streptomycin biosynthesis SBML MML
spu00530 (Undocumented) SBML MML
spu00550 Peptidoglycan biosynthesis SBML MML
spu00561 Glycerolipid metabolism SBML MML
spu00562 Inositol phosphate metabolism SBML MML
spu00564 Glycerophospholipid metabolism SBML MML
spu00565 Ether lipid metabolism SBML MML
spu00590 Arachidonic acid metabolism SBML MML
spu00591 Linoleic acid metabolism SBML MML
spu00592 alpha-Linolenic acid metabolism SBML MML
spu00600 Sphingolipid metabolism SBML MML
spu00620 Pyruvate metabolism SBML MML
spu00624 1- and 2-Methylnaphthalene degradation SBML MML
spu00625 (Undocumented) SBML MML
spu00626 Naphthalene and anthracene degradation SBML MML
spu00630 Glyoxylate and dicarboxylate metabolism SBML MML
spu00632 (Undocumented) SBML MML
spu00640 Propanoate metabolism SBML MML
spu00641 3-Chloroacrylic acid degradation SBML MML
spu00643 Styrene degradation SBML MML
spu00650 Butanoate metabolism SBML MML
spu00670 One carbon pool by folate SBML MML
spu00680 Methane metabolism SBML MML
spu00710 (Undocumented) SBML MML
spu00720 (Undocumented) SBML MML
spu00730 Thiamine metabolism SBML MML
spu00740 Riboflavin metabolism SBML MML
spu00750 Vitamin B6 metabolism SBML MML
spu00760 Nicotinate and nicotinamide metabolism SBML MML
spu00770 Pantothenate and CoA biosynthesis SBML MML
spu00785 Lipoic acid metabolism SBML MML
spu00790 Folate biosynthesis SBML MML
spu00860 Porphyrin and chlorophyll metabolism SBML MML
spu00900 Terpenoid backbone biosynthesis SBML MML
spu00903 (Undocumented) SBML MML
spu00910 Nitrogen metabolism SBML MML
spu00920 Sulfur metabolism SBML MML
spu00930 Caprolactam degradation SBML MML
spu00940 (Undocumented) SBML MML
spu00950 (Undocumented) SBML MML
spu00960 (Undocumented) SBML MML
spu00970 Aminoacyl-tRNA biosynthesis SBML MML
spu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
spu00982 (Undocumented) SBML MML
spu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.