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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism spy: Streptococcus pyogenes SF370 (serotype M1)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
spy00010 Glycolysis / Gluconeogenesis SBML MML
spy00020 Citrate cycle (TCA cycle) SBML MML
spy00030 Pentose phosphate pathway SBML MML
spy00040 Pentose and glucuronate interconversions SBML MML
spy00051 Fructose and mannose metabolism SBML MML
spy00052 Galactose metabolism SBML MML
spy00053 Ascorbate and aldarate metabolism SBML MML
spy00061 Fatty acid biosynthesis SBML MML
spy00071 Fatty acid metabolism SBML MML
spy00072 Synthesis and degradation of ketone bodies SBML MML
spy00100 (Undocumented) SBML MML
spy00220 (Undocumented) SBML MML
spy00230 Purine metabolism SBML MML
spy00240 Pyrimidine metabolism SBML MML
spy00251 (Undocumented) SBML MML
spy00252 (Undocumented) SBML MML
spy00260 Glycine, serine and threonine metabolism SBML MML
spy00271 (Undocumented) SBML MML
spy00272 (Undocumented) SBML MML
spy00280 Valine, leucine and isoleucine degradation SBML MML
spy00290 Valine, leucine and isoleucine biosynthesis SBML MML
spy00300 Lysine biosynthesis SBML MML
spy00310 Lysine degradation SBML MML
spy00330 Arginine and proline metabolism SBML MML
spy00340 Histidine metabolism SBML MML
spy00350 Tyrosine metabolism SBML MML
spy00360 Phenylalanine metabolism SBML MML
spy00380 Tryptophan metabolism SBML MML
spy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
spy00430 Taurine and hypotaurine metabolism SBML MML
spy00450 Selenoamino acid metabolism SBML MML
spy00460 (Undocumented) SBML MML
spy00471 D-Glutamine and D-glutamate metabolism SBML MML
spy00473 D-Alanine metabolism SBML MML
spy00480 Glutathione metabolism SBML MML
spy00500 Starch and sucrose metabolism SBML MML
spy00520 Amino sugar and nucleotide sugar metabolism SBML MML
spy00521 Streptomycin biosynthesis SBML MML
spy00523 Polyketide sugar unit biosynthesis SBML MML
spy00530 (Undocumented) SBML MML
spy00550 Peptidoglycan biosynthesis SBML MML
spy00561 Glycerolipid metabolism SBML MML
spy00562 Inositol phosphate metabolism SBML MML
spy00564 Glycerophospholipid metabolism SBML MML
spy00590 Arachidonic acid metabolism SBML MML
spy00620 Pyruvate metabolism SBML MML
spy00624 1- and 2-Methylnaphthalene degradation SBML MML
spy00630 Glyoxylate and dicarboxylate metabolism SBML MML
spy00632 (Undocumented) SBML MML
spy00640 Propanoate metabolism SBML MML
spy00641 3-Chloroacrylic acid degradation SBML MML
spy00643 Styrene degradation SBML MML
spy00650 Butanoate metabolism SBML MML
spy00670 One carbon pool by folate SBML MML
spy00680 Methane metabolism SBML MML
spy00710 (Undocumented) SBML MML
spy00730 Thiamine metabolism SBML MML
spy00740 Riboflavin metabolism SBML MML
spy00750 Vitamin B6 metabolism SBML MML
spy00760 Nicotinate and nicotinamide metabolism SBML MML
spy00770 Pantothenate and CoA biosynthesis SBML MML
spy00780 Biotin metabolism SBML MML
spy00785 Lipoic acid metabolism SBML MML
spy00790 Folate biosynthesis SBML MML
spy00860 Porphyrin and chlorophyll metabolism SBML MML
spy00900 Terpenoid backbone biosynthesis SBML MML
spy00903 (Undocumented) SBML MML
spy00910 Nitrogen metabolism SBML MML
spy00920 Sulfur metabolism SBML MML
spy00960 (Undocumented) SBML MML
spy00970 Aminoacyl-tRNA biosynthesis SBML MML
spy00982 (Undocumented) SBML MML
spy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.