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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ssp: Staphylococcus saprophyticus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ssp00010 Glycolysis / Gluconeogenesis SBML MML
ssp00020 Citrate cycle (TCA cycle) SBML MML
ssp00030 Pentose phosphate pathway SBML MML
ssp00040 Pentose and glucuronate interconversions SBML MML
ssp00051 Fructose and mannose metabolism SBML MML
ssp00052 Galactose metabolism SBML MML
ssp00053 Ascorbate and aldarate metabolism SBML MML
ssp00061 Fatty acid biosynthesis SBML MML
ssp00062 Fatty acid elongation in mitochondria SBML MML
ssp00071 Fatty acid metabolism SBML MML
ssp00072 Synthesis and degradation of ketone bodies SBML MML
ssp00100 (Undocumented) SBML MML
ssp00120 (Undocumented) SBML MML
ssp00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ssp00150 Androgen and estrogen metabolism SBML MML
ssp00220 (Undocumented) SBML MML
ssp00230 Purine metabolism SBML MML
ssp00240 Pyrimidine metabolism SBML MML
ssp00251 (Undocumented) SBML MML
ssp00252 (Undocumented) SBML MML
ssp00260 Glycine, serine and threonine metabolism SBML MML
ssp00271 (Undocumented) SBML MML
ssp00272 (Undocumented) SBML MML
ssp00280 Valine, leucine and isoleucine degradation SBML MML
ssp00281 Geraniol degradation SBML MML
ssp00290 Valine, leucine and isoleucine biosynthesis SBML MML
ssp00300 Lysine biosynthesis SBML MML
ssp00310 Lysine degradation SBML MML
ssp00330 Arginine and proline metabolism SBML MML
ssp00340 Histidine metabolism SBML MML
ssp00350 Tyrosine metabolism SBML MML
ssp00360 Phenylalanine metabolism SBML MML
ssp00361 gamma-Hexachlorocyclohexane degradation SBML MML
ssp00362 (Undocumented) SBML MML
ssp00363 Bisphenol A degradation SBML MML
ssp00380 Tryptophan metabolism SBML MML
ssp00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ssp00410 beta-Alanine metabolism SBML MML
ssp00430 Taurine and hypotaurine metabolism SBML MML
ssp00440 Phosphonate and phosphinate metabolism SBML MML
ssp00450 Selenoamino acid metabolism SBML MML
ssp00460 (Undocumented) SBML MML
ssp00471 D-Glutamine and D-glutamate metabolism SBML MML
ssp00472 D-Arginine and D-ornithine metabolism SBML MML
ssp00473 D-Alanine metabolism SBML MML
ssp00480 Glutathione metabolism SBML MML
ssp00500 Starch and sucrose metabolism SBML MML
ssp00510 (Undocumented) SBML MML
ssp00520 Amino sugar and nucleotide sugar metabolism SBML MML
ssp00521 Streptomycin biosynthesis SBML MML
ssp00530 (Undocumented) SBML MML
ssp00550 Peptidoglycan biosynthesis SBML MML
ssp00561 Glycerolipid metabolism SBML MML
ssp00562 Inositol phosphate metabolism SBML MML
ssp00564 Glycerophospholipid metabolism SBML MML
ssp00590 Arachidonic acid metabolism SBML MML
ssp00592 alpha-Linolenic acid metabolism SBML MML
ssp00620 Pyruvate metabolism SBML MML
ssp00622 Toluene and xylene degradation SBML MML
ssp00624 1- and 2-Methylnaphthalene degradation SBML MML
ssp00626 Naphthalene and anthracene degradation SBML MML
ssp00627 1,4-Dichlorobenzene degradation SBML MML
ssp00630 Glyoxylate and dicarboxylate metabolism SBML MML
ssp00631 1,2-Dichloroethane degradation SBML MML
ssp00632 (Undocumented) SBML MML
ssp00640 Propanoate metabolism SBML MML
ssp00641 3-Chloroacrylic acid degradation SBML MML
ssp00642 Ethylbenzene degradation SBML MML
ssp00650 Butanoate metabolism SBML MML
ssp00660 C5-Branched dibasic acid metabolism SBML MML
ssp00670 One carbon pool by folate SBML MML
ssp00680 Methane metabolism SBML MML
ssp00710 (Undocumented) SBML MML
ssp00720 (Undocumented) SBML MML
ssp00730 Thiamine metabolism SBML MML
ssp00740 Riboflavin metabolism SBML MML
ssp00750 Vitamin B6 metabolism SBML MML
ssp00760 Nicotinate and nicotinamide metabolism SBML MML
ssp00770 Pantothenate and CoA biosynthesis SBML MML
ssp00780 Biotin metabolism SBML MML
ssp00785 Lipoic acid metabolism SBML MML
ssp00790 Folate biosynthesis SBML MML
ssp00860 Porphyrin and chlorophyll metabolism SBML MML
ssp00900 Terpenoid backbone biosynthesis SBML MML
ssp00903 (Undocumented) SBML MML
ssp00910 Nitrogen metabolism SBML MML
ssp00920 Sulfur metabolism SBML MML
ssp00930 Caprolactam degradation SBML MML
ssp00960 (Undocumented) SBML MML
ssp00970 Aminoacyl-tRNA biosynthesis SBML MML
ssp00982 (Undocumented) SBML MML
ssp00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.