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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism stc: Streptococcus thermophilus CNRZ1066

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
stc00010 Glycolysis / Gluconeogenesis SBML MML
stc00020 Citrate cycle (TCA cycle) SBML MML
stc00030 Pentose phosphate pathway SBML MML
stc00040 Pentose and glucuronate interconversions SBML MML
stc00051 Fructose and mannose metabolism SBML MML
stc00052 Galactose metabolism SBML MML
stc00061 Fatty acid biosynthesis SBML MML
stc00071 Fatty acid metabolism SBML MML
stc00100 (Undocumented) SBML MML
stc00220 (Undocumented) SBML MML
stc00230 Purine metabolism SBML MML
stc00240 Pyrimidine metabolism SBML MML
stc00251 (Undocumented) SBML MML
stc00252 (Undocumented) SBML MML
stc00260 Glycine, serine and threonine metabolism SBML MML
stc00271 (Undocumented) SBML MML
stc00272 (Undocumented) SBML MML
stc00280 Valine, leucine and isoleucine degradation SBML MML
stc00290 Valine, leucine and isoleucine biosynthesis SBML MML
stc00300 Lysine biosynthesis SBML MML
stc00330 Arginine and proline metabolism SBML MML
stc00340 Histidine metabolism SBML MML
stc00350 Tyrosine metabolism SBML MML
stc00380 Tryptophan metabolism SBML MML
stc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
stc00430 Taurine and hypotaurine metabolism SBML MML
stc00450 Selenoamino acid metabolism SBML MML
stc00460 (Undocumented) SBML MML
stc00471 D-Glutamine and D-glutamate metabolism SBML MML
stc00473 D-Alanine metabolism SBML MML
stc00480 Glutathione metabolism SBML MML
stc00500 Starch and sucrose metabolism SBML MML
stc00520 Amino sugar and nucleotide sugar metabolism SBML MML
stc00521 Streptomycin biosynthesis SBML MML
stc00523 Polyketide sugar unit biosynthesis SBML MML
stc00530 (Undocumented) SBML MML
stc00550 Peptidoglycan biosynthesis SBML MML
stc00561 Glycerolipid metabolism SBML MML
stc00562 Inositol phosphate metabolism SBML MML
stc00564 Glycerophospholipid metabolism SBML MML
stc00620 Pyruvate metabolism SBML MML
stc00624 1- and 2-Methylnaphthalene degradation SBML MML
stc00630 Glyoxylate and dicarboxylate metabolism SBML MML
stc00632 (Undocumented) SBML MML
stc00640 Propanoate metabolism SBML MML
stc00641 3-Chloroacrylic acid degradation SBML MML
stc00650 Butanoate metabolism SBML MML
stc00660 C5-Branched dibasic acid metabolism SBML MML
stc00670 One carbon pool by folate SBML MML
stc00680 Methane metabolism SBML MML
stc00710 (Undocumented) SBML MML
stc00720 (Undocumented) SBML MML
stc00730 Thiamine metabolism SBML MML
stc00740 Riboflavin metabolism SBML MML
stc00750 Vitamin B6 metabolism SBML MML
stc00760 Nicotinate and nicotinamide metabolism SBML MML
stc00770 Pantothenate and CoA biosynthesis SBML MML
stc00780 Biotin metabolism SBML MML
stc00785 Lipoic acid metabolism SBML MML
stc00790 Folate biosynthesis SBML MML
stc00860 Porphyrin and chlorophyll metabolism SBML MML
stc00900 Terpenoid backbone biosynthesis SBML MML
stc00903 (Undocumented) SBML MML
stc00910 Nitrogen metabolism SBML MML
stc00920 Sulfur metabolism SBML MML
stc00970 Aminoacyl-tRNA biosynthesis SBML MML
stc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
stc00982 (Undocumented) SBML MML
stc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.