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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism swd: Shewanella woodyi ATCC 51908

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
swd00010 Glycolysis / Gluconeogenesis SBML MML
swd00020 Citrate cycle (TCA cycle) SBML MML
swd00030 Pentose phosphate pathway SBML MML
swd00031 (Undocumented) SBML MML
swd00040 Pentose and glucuronate interconversions SBML MML
swd00051 Fructose and mannose metabolism SBML MML
swd00052 Galactose metabolism SBML MML
swd00053 Ascorbate and aldarate metabolism SBML MML
swd00061 Fatty acid biosynthesis SBML MML
swd00062 Fatty acid elongation in mitochondria SBML MML
swd00071 Fatty acid metabolism SBML MML
swd00072 Synthesis and degradation of ketone bodies SBML MML
swd00100 (Undocumented) SBML MML
swd00120 (Undocumented) SBML MML
swd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
swd00150 Androgen and estrogen metabolism SBML MML
swd00220 (Undocumented) SBML MML
swd00230 Purine metabolism SBML MML
swd00240 Pyrimidine metabolism SBML MML
swd00251 (Undocumented) SBML MML
swd00252 (Undocumented) SBML MML
swd00260 Glycine, serine and threonine metabolism SBML MML
swd00271 (Undocumented) SBML MML
swd00272 (Undocumented) SBML MML
swd00280 Valine, leucine and isoleucine degradation SBML MML
swd00281 Geraniol degradation SBML MML
swd00290 Valine, leucine and isoleucine biosynthesis SBML MML
swd00300 Lysine biosynthesis SBML MML
swd00310 Lysine degradation SBML MML
swd00311 Penicillin and cephalosporin biosynthesis SBML MML
swd00330 Arginine and proline metabolism SBML MML
swd00340 Histidine metabolism SBML MML
swd00350 Tyrosine metabolism SBML MML
swd00360 Phenylalanine metabolism SBML MML
swd00361 gamma-Hexachlorocyclohexane degradation SBML MML
swd00362 (Undocumented) SBML MML
swd00364 Fluorobenzoate degradation SBML MML
swd00380 Tryptophan metabolism SBML MML
swd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
swd00401 Novobiocin biosynthesis SBML MML
swd00410 beta-Alanine metabolism SBML MML
swd00430 Taurine and hypotaurine metabolism SBML MML
swd00450 Selenoamino acid metabolism SBML MML
swd00460 (Undocumented) SBML MML
swd00471 D-Glutamine and D-glutamate metabolism SBML MML
swd00473 D-Alanine metabolism SBML MML
swd00480 Glutathione metabolism SBML MML
swd00500 Starch and sucrose metabolism SBML MML
swd00520 Amino sugar and nucleotide sugar metabolism SBML MML
swd00521 Streptomycin biosynthesis SBML MML
swd00523 Polyketide sugar unit biosynthesis SBML MML
swd00530 (Undocumented) SBML MML
swd00540 Lipopolysaccharide biosynthesis SBML MML
swd00550 Peptidoglycan biosynthesis SBML MML
swd00561 Glycerolipid metabolism SBML MML
swd00562 Inositol phosphate metabolism SBML MML
swd00564 Glycerophospholipid metabolism SBML MML
swd00565 Ether lipid metabolism SBML MML
swd00590 Arachidonic acid metabolism SBML MML
swd00591 Linoleic acid metabolism SBML MML
swd00592 alpha-Linolenic acid metabolism SBML MML
swd00600 Sphingolipid metabolism SBML MML
swd00620 Pyruvate metabolism SBML MML
swd00621 (Undocumented) SBML MML
swd00622 Toluene and xylene degradation SBML MML
swd00624 1- and 2-Methylnaphthalene degradation SBML MML
swd00626 Naphthalene and anthracene degradation SBML MML
swd00627 1,4-Dichlorobenzene degradation SBML MML
swd00628 Fluorene degradation SBML MML
swd00629 Carbazole degradation SBML MML
swd00630 Glyoxylate and dicarboxylate metabolism SBML MML
swd00631 1,2-Dichloroethane degradation SBML MML
swd00632 (Undocumented) SBML MML
swd00633 Trinitrotoluene degradation SBML MML
swd00640 Propanoate metabolism SBML MML
swd00641 3-Chloroacrylic acid degradation SBML MML
swd00642 Ethylbenzene degradation SBML MML
swd00643 Styrene degradation SBML MML
swd00650 Butanoate metabolism SBML MML
swd00660 C5-Branched dibasic acid metabolism SBML MML
swd00670 One carbon pool by folate SBML MML
swd00680 Methane metabolism SBML MML
swd00710 (Undocumented) SBML MML
swd00720 (Undocumented) SBML MML
swd00730 Thiamine metabolism SBML MML
swd00740 Riboflavin metabolism SBML MML
swd00750 Vitamin B6 metabolism SBML MML
swd00760 Nicotinate and nicotinamide metabolism SBML MML
swd00770 Pantothenate and CoA biosynthesis SBML MML
swd00780 Biotin metabolism SBML MML
swd00790 Folate biosynthesis SBML MML
swd00791 Atrazine degradation SBML MML
swd00860 Porphyrin and chlorophyll metabolism SBML MML
swd00900 Terpenoid backbone biosynthesis SBML MML
swd00903 (Undocumented) SBML MML
swd00910 Nitrogen metabolism SBML MML
swd00920 Sulfur metabolism SBML MML
swd00930 Caprolactam degradation SBML MML
swd00941 (Undocumented) SBML MML
swd00950 (Undocumented) SBML MML
swd00960 (Undocumented) SBML MML
swd00970 Aminoacyl-tRNA biosynthesis SBML MML
swd00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
swd00982 (Undocumented) SBML MML
swd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.