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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism syd: Synechococcus sp. CC9605

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
syd00010 Glycolysis / Gluconeogenesis SBML MML
syd00020 Citrate cycle (TCA cycle) SBML MML
syd00030 Pentose phosphate pathway SBML MML
syd00040 Pentose and glucuronate interconversions SBML MML
syd00051 Fructose and mannose metabolism SBML MML
syd00052 Galactose metabolism SBML MML
syd00053 Ascorbate and aldarate metabolism SBML MML
syd00061 Fatty acid biosynthesis SBML MML
syd00071 Fatty acid metabolism SBML MML
syd00100 (Undocumented) SBML MML
syd00120 (Undocumented) SBML MML
syd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
syd00220 (Undocumented) SBML MML
syd00230 Purine metabolism SBML MML
syd00240 Pyrimidine metabolism SBML MML
syd00251 (Undocumented) SBML MML
syd00252 (Undocumented) SBML MML
syd00260 Glycine, serine and threonine metabolism SBML MML
syd00271 (Undocumented) SBML MML
syd00272 (Undocumented) SBML MML
syd00280 Valine, leucine and isoleucine degradation SBML MML
syd00290 Valine, leucine and isoleucine biosynthesis SBML MML
syd00300 Lysine biosynthesis SBML MML
syd00310 Lysine degradation SBML MML
syd00330 Arginine and proline metabolism SBML MML
syd00340 Histidine metabolism SBML MML
syd00350 Tyrosine metabolism SBML MML
syd00360 Phenylalanine metabolism SBML MML
syd00361 gamma-Hexachlorocyclohexane degradation SBML MML
syd00362 (Undocumented) SBML MML
syd00364 Fluorobenzoate degradation SBML MML
syd00380 Tryptophan metabolism SBML MML
syd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
syd00401 Novobiocin biosynthesis SBML MML
syd00410 beta-Alanine metabolism SBML MML
syd00430 Taurine and hypotaurine metabolism SBML MML
syd00450 Selenoamino acid metabolism SBML MML
syd00460 (Undocumented) SBML MML
syd00471 D-Glutamine and D-glutamate metabolism SBML MML
syd00473 D-Alanine metabolism SBML MML
syd00480 Glutathione metabolism SBML MML
syd00500 Starch and sucrose metabolism SBML MML
syd00520 Amino sugar and nucleotide sugar metabolism SBML MML
syd00521 Streptomycin biosynthesis SBML MML
syd00523 Polyketide sugar unit biosynthesis SBML MML
syd00530 (Undocumented) SBML MML
syd00540 Lipopolysaccharide biosynthesis SBML MML
syd00550 Peptidoglycan biosynthesis SBML MML
syd00561 Glycerolipid metabolism SBML MML
syd00562 Inositol phosphate metabolism SBML MML
syd00564 Glycerophospholipid metabolism SBML MML
syd00590 Arachidonic acid metabolism SBML MML
syd00620 Pyruvate metabolism SBML MML
syd00626 Naphthalene and anthracene degradation SBML MML
syd00627 1,4-Dichlorobenzene degradation SBML MML
syd00630 Glyoxylate and dicarboxylate metabolism SBML MML
syd00632 (Undocumented) SBML MML
syd00640 Propanoate metabolism SBML MML
syd00641 3-Chloroacrylic acid degradation SBML MML
syd00643 Styrene degradation SBML MML
syd00650 Butanoate metabolism SBML MML
syd00670 One carbon pool by folate SBML MML
syd00680 Methane metabolism SBML MML
syd00710 (Undocumented) SBML MML
syd00720 (Undocumented) SBML MML
syd00730 Thiamine metabolism SBML MML
syd00740 Riboflavin metabolism SBML MML
syd00750 Vitamin B6 metabolism SBML MML
syd00760 Nicotinate and nicotinamide metabolism SBML MML
syd00770 Pantothenate and CoA biosynthesis SBML MML
syd00780 Biotin metabolism SBML MML
syd00785 Lipoic acid metabolism SBML MML
syd00790 Folate biosynthesis SBML MML
syd00791 Atrazine degradation SBML MML
syd00860 Porphyrin and chlorophyll metabolism SBML MML
syd00900 Terpenoid backbone biosynthesis SBML MML
syd00903 (Undocumented) SBML MML
syd00904 (Undocumented) SBML MML
syd00906 Carotenoid biosynthesis SBML MML
syd00910 Nitrogen metabolism SBML MML
syd00920 Sulfur metabolism SBML MML
syd00940 (Undocumented) SBML MML
syd00950 (Undocumented) SBML MML
syd00970 Aminoacyl-tRNA biosynthesis SBML MML
syd00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
syd00982 (Undocumented) SBML MML
syd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.