This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sye: Synechococcus sp. CC9902

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sye00010 Glycolysis / Gluconeogenesis SBML MML
sye00020 Citrate cycle (TCA cycle) SBML MML
sye00030 Pentose phosphate pathway SBML MML
sye00040 Pentose and glucuronate interconversions SBML MML
sye00051 Fructose and mannose metabolism SBML MML
sye00052 Galactose metabolism SBML MML
sye00053 Ascorbate and aldarate metabolism SBML MML
sye00061 Fatty acid biosynthesis SBML MML
sye00071 Fatty acid metabolism SBML MML
sye00100 (Undocumented) SBML MML
sye00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sye00220 (Undocumented) SBML MML
sye00230 Purine metabolism SBML MML
sye00240 Pyrimidine metabolism SBML MML
sye00251 (Undocumented) SBML MML
sye00252 (Undocumented) SBML MML
sye00260 Glycine, serine and threonine metabolism SBML MML
sye00271 (Undocumented) SBML MML
sye00272 (Undocumented) SBML MML
sye00280 Valine, leucine and isoleucine degradation SBML MML
sye00290 Valine, leucine and isoleucine biosynthesis SBML MML
sye00300 Lysine biosynthesis SBML MML
sye00310 Lysine degradation SBML MML
sye00330 Arginine and proline metabolism SBML MML
sye00340 Histidine metabolism SBML MML
sye00350 Tyrosine metabolism SBML MML
sye00360 Phenylalanine metabolism SBML MML
sye00380 Tryptophan metabolism SBML MML
sye00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sye00401 Novobiocin biosynthesis SBML MML
sye00410 beta-Alanine metabolism SBML MML
sye00450 Selenoamino acid metabolism SBML MML
sye00460 (Undocumented) SBML MML
sye00471 D-Glutamine and D-glutamate metabolism SBML MML
sye00473 D-Alanine metabolism SBML MML
sye00480 Glutathione metabolism SBML MML
sye00500 Starch and sucrose metabolism SBML MML
sye00520 Amino sugar and nucleotide sugar metabolism SBML MML
sye00521 Streptomycin biosynthesis SBML MML
sye00523 Polyketide sugar unit biosynthesis SBML MML
sye00530 (Undocumented) SBML MML
sye00540 Lipopolysaccharide biosynthesis SBML MML
sye00550 Peptidoglycan biosynthesis SBML MML
sye00561 Glycerolipid metabolism SBML MML
sye00562 Inositol phosphate metabolism SBML MML
sye00564 Glycerophospholipid metabolism SBML MML
sye00590 Arachidonic acid metabolism SBML MML
sye00620 Pyruvate metabolism SBML MML
sye00626 Naphthalene and anthracene degradation SBML MML
sye00630 Glyoxylate and dicarboxylate metabolism SBML MML
sye00632 (Undocumented) SBML MML
sye00640 Propanoate metabolism SBML MML
sye00641 3-Chloroacrylic acid degradation SBML MML
sye00650 Butanoate metabolism SBML MML
sye00660 C5-Branched dibasic acid metabolism SBML MML
sye00670 One carbon pool by folate SBML MML
sye00710 (Undocumented) SBML MML
sye00720 (Undocumented) SBML MML
sye00730 Thiamine metabolism SBML MML
sye00740 Riboflavin metabolism SBML MML
sye00750 Vitamin B6 metabolism SBML MML
sye00760 Nicotinate and nicotinamide metabolism SBML MML
sye00770 Pantothenate and CoA biosynthesis SBML MML
sye00780 Biotin metabolism SBML MML
sye00785 Lipoic acid metabolism SBML MML
sye00790 Folate biosynthesis SBML MML
sye00860 Porphyrin and chlorophyll metabolism SBML MML
sye00900 Terpenoid backbone biosynthesis SBML MML
sye00903 (Undocumented) SBML MML
sye00906 Carotenoid biosynthesis SBML MML
sye00910 Nitrogen metabolism SBML MML
sye00920 Sulfur metabolism SBML MML
sye00940 (Undocumented) SBML MML
sye00941 (Undocumented) SBML MML
sye00950 (Undocumented) SBML MML
sye00970 Aminoacyl-tRNA biosynthesis SBML MML
sye00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sye00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.