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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism syr: Synechococcus sp. RCC307

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
syr00010 Glycolysis / Gluconeogenesis SBML MML
syr00020 Citrate cycle (TCA cycle) SBML MML
syr00030 Pentose phosphate pathway SBML MML
syr00040 Pentose and glucuronate interconversions SBML MML
syr00051 Fructose and mannose metabolism SBML MML
syr00052 Galactose metabolism SBML MML
syr00053 Ascorbate and aldarate metabolism SBML MML
syr00061 Fatty acid biosynthesis SBML MML
syr00071 Fatty acid metabolism SBML MML
syr00100 (Undocumented) SBML MML
syr00120 (Undocumented) SBML MML
syr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
syr00220 (Undocumented) SBML MML
syr00230 Purine metabolism SBML MML
syr00240 Pyrimidine metabolism SBML MML
syr00251 (Undocumented) SBML MML
syr00252 (Undocumented) SBML MML
syr00260 Glycine, serine and threonine metabolism SBML MML
syr00271 (Undocumented) SBML MML
syr00272 (Undocumented) SBML MML
syr00280 Valine, leucine and isoleucine degradation SBML MML
syr00290 Valine, leucine and isoleucine biosynthesis SBML MML
syr00300 Lysine biosynthesis SBML MML
syr00310 Lysine degradation SBML MML
syr00330 Arginine and proline metabolism SBML MML
syr00340 Histidine metabolism SBML MML
syr00350 Tyrosine metabolism SBML MML
syr00360 Phenylalanine metabolism SBML MML
syr00361 gamma-Hexachlorocyclohexane degradation SBML MML
syr00364 Fluorobenzoate degradation SBML MML
syr00380 Tryptophan metabolism SBML MML
syr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
syr00401 Novobiocin biosynthesis SBML MML
syr00410 beta-Alanine metabolism SBML MML
syr00430 Taurine and hypotaurine metabolism SBML MML
syr00450 Selenoamino acid metabolism SBML MML
syr00460 (Undocumented) SBML MML
syr00471 D-Glutamine and D-glutamate metabolism SBML MML
syr00473 D-Alanine metabolism SBML MML
syr00480 Glutathione metabolism SBML MML
syr00500 Starch and sucrose metabolism SBML MML
syr00510 (Undocumented) SBML MML
syr00520 Amino sugar and nucleotide sugar metabolism SBML MML
syr00521 Streptomycin biosynthesis SBML MML
syr00523 Polyketide sugar unit biosynthesis SBML MML
syr00530 (Undocumented) SBML MML
syr00540 Lipopolysaccharide biosynthesis SBML MML
syr00550 Peptidoglycan biosynthesis SBML MML
syr00561 Glycerolipid metabolism SBML MML
syr00562 Inositol phosphate metabolism SBML MML
syr00564 Glycerophospholipid metabolism SBML MML
syr00590 Arachidonic acid metabolism SBML MML
syr00620 Pyruvate metabolism SBML MML
syr00626 Naphthalene and anthracene degradation SBML MML
syr00627 1,4-Dichlorobenzene degradation SBML MML
syr00630 Glyoxylate and dicarboxylate metabolism SBML MML
syr00632 (Undocumented) SBML MML
syr00640 Propanoate metabolism SBML MML
syr00641 3-Chloroacrylic acid degradation SBML MML
syr00650 Butanoate metabolism SBML MML
syr00660 C5-Branched dibasic acid metabolism SBML MML
syr00670 One carbon pool by folate SBML MML
syr00680 Methane metabolism SBML MML
syr00710 (Undocumented) SBML MML
syr00720 (Undocumented) SBML MML
syr00730 Thiamine metabolism SBML MML
syr00740 Riboflavin metabolism SBML MML
syr00750 Vitamin B6 metabolism SBML MML
syr00760 Nicotinate and nicotinamide metabolism SBML MML
syr00770 Pantothenate and CoA biosynthesis SBML MML
syr00780 Biotin metabolism SBML MML
syr00785 Lipoic acid metabolism SBML MML
syr00790 Folate biosynthesis SBML MML
syr00791 Atrazine degradation SBML MML
syr00860 Porphyrin and chlorophyll metabolism SBML MML
syr00900 Terpenoid backbone biosynthesis SBML MML
syr00903 (Undocumented) SBML MML
syr00906 Carotenoid biosynthesis SBML MML
syr00910 Nitrogen metabolism SBML MML
syr00920 Sulfur metabolism SBML MML
syr00940 (Undocumented) SBML MML
syr00950 (Undocumented) SBML MML
syr00970 Aminoacyl-tRNA biosynthesis SBML MML
syr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
syr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.